Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00180 ATGACGAGTCGCCTGAAGGAAGACGAGAAGAACGAGCGCGTGATTCGAGGTCTTCTCAAGCTTCAACCTAATCGCAGATGCATTAACTGCAACAGTCTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACGAACTGTAGTGGAATACATCGGGAATTCACTCATCGAGTAAAGTCAGTTTCAATGGCTAAGTTTACTTCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAATATATTTTAAAGAATGGGATGCACAACGTCATTCTTTCCCCGATAGCAGTAATGTTGACAGGCTACGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATTTACTGGAGAAAAGCCCAATGACAAACCACCAAGAGTCAAAGCAGGTGACAAAGATGATTTCTATCAAGGAGGAGGATCTAAAAGCCCTCCCTATGAGGATGCATATGAACGTCGTTATAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAGGAGAAGTCCTGGTCGTCCTCCAATAATTAATGATTGGCGCCGTGAAGATCGTAGAATATCAGATGGAGATTATAAGGTGGAAAGCCAATCTCCTGAGCGAGCCAAAGATGTGGGTTCTTCAAGCCCACCAGTGGTCCGACCTGTTAGAGAAATATTGGGAGAAAATGTAGTACCTCTTCGGATAAGTGAACCACCCAAATCAAACAGTGGAAGACCTGCTGATAGTTCAGCATTGACACAGAGAACTGCATCTTCCAGTAGCTTAACATCTGTCAACGAAAATCCAGTAGATGTTAAACTTGAGACGACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACTTCCGGTAGCTCCATCAGTTCCTCAAGCCCAACAATCTACTGTGCCGCAACCTGTTGTGCAACCAGCAAATTCCGGCAATGACAATTGGGCCTCTTTTGATGTTGCTCCTGGGGCAAAAGCAACTCCAAGCTCCTCAAATTTCAATTCACTTGAATCAGTGTTATCCGAATTGTCTGTGCCAGCATCTTTACCTGCTCAATTTTCTGGAGTCCAAGTACCTATTCCAGCACCATCTCTTACTTCTACTTCTGGACCCGCAAATGTTACTGGTTTCTCAGCTTTCCCACCCAGCAATGCTTCAGTACCATCTCCTGGATTGACATCAGTATCGCCTCTTAATAATGCAGGACAGTGGGCCAGTTTGCAGCAGCAACAACCATTGTTCCCTGCTGCTGCTAGTCAGTCTACTACACAACAATTTACACCACCATTAGGTGGAGCAGCAAATAATCAGTCATGGAATGTACCTTCTGCACCCACAGTGCAAGGACATCCAAACACACCAATGCCGCATACATACCATCATGCCTCAAAGCCTGCCAATGAGGCTATATCCAGTGTTGTTTCACAACCTCCTGCTGTGGAAGTTAAAGCAAGTGGAAGGAAAGAACTTCCTGAGGATCTGTTCACTGTAAAATATTCTCCCTTCCCAGCTCCAGTTGTAGGTTGGCAAATGGGTGTTCCCCATGGCATGGGTATCGCAATGCCATACAATAATGTGGTGCCTGTGCCAAGTTTTCCTCAGCCATCAAGGTCAATAAATCCATTTGATGTCAGCAGTGCACCAGCCCCAAATCAAGCCCCAACTTTTCCTTCTATGTCATCCTTGCAAGGTGCCCTGCCTAGTGTACCGCCTGCAGGTGCAGTGCACCCTTCAAACATGGGTAATCCATCACTTGCCTGGACTCCACCCCTGTCATCATCATTTCGTCCTACACAAGCACAAATTCATGCATCTGCATTGGGGCCAAGGGCATACATGGGGCAACAAATGCCAACTAACATGCCAATACCAAGGCAAGTTGGGGATTTCGGAAATCAAGGAGCTGCTTTCGGCTTGTGA 1962 0.4536 MTSRLKEDEKNERVIRGLLKLQPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNQRAKEIYFKEWDAQRHSFPDSSNVDRLRDFIKHVYVDRRFTGEKPNDKPPRVKAGDKDDFYQGGGSKSPPYEDAYERRYSDRSSPGGRSPGYDQESRQYGDYRRSPGRPPIINDWRREDRRISDGDYKVESQSPERAKDVGSSSPPVVRPVREILGENVVPLRISEPPKSNSGRPADSSALTQRTASSSSLTSVNENPVDVKLETTKSLIDFDADPELPVAPSVPQAQQSTVPQPVVQPANSGNDNWASFDVAPGAKATPSSSNFNSLESVLSELSVPASLPAQFSGVQVPIPAPSLTSTSGPANVTGFSAFPPSNASVPSPGLTSVSPLNNAGQWASLQQQQPLFPAAASQSTTQQFTPPLGGAANNQSWNVPSAPTVQGHPNTPMPHTYHHASKPANEAISSVVSQPPAVEVKASGRKELPEDLFTVKYSPFPAPVVGWQMGVPHGMGIAMPYNNVVPVPSFPQPSRSINPFDVSSAPAPNQAPTFPSMSSLQGALPSVPPAGAVHPSNMGNPSLAWTPPLSSSFRPTQAQIHASALGPRAYMGQQMPTNMPIPRQVGDFGNQGAAFGL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00180 653 MobiDBLite consensus disorder prediction 123 281 - -
Cca08g00180 653 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Cca08g00180 653 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Cca08g00180 653 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Cca08g00180 653 MobiDBLite consensus disorder prediction 253 281 - -
Cca08g00180 653 CDD ArfGap_AGFG 12 122 - -
Cca08g00180 653 MobiDBLite consensus disorder prediction 192 217 - -
Cca08g00180 653 MobiDBLite consensus disorder prediction 554 579 - -
Cca08g00180 653 PANTHER ARF GTPASE ACTIVATOR 1 653 - -
Cca08g00180 653 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Cca08g00180 653 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Cca08g00180 653 MobiDBLite consensus disorder prediction 595 613 - -
Cca08g00180 653 MobiDBLite consensus disorder prediction 554 613 - -
Cca08g00180 653 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Cca08g00180 653 MobiDBLite consensus disorder prediction 305 328 - -
Cca08g00180 653 PANTHER ARFGAP/RECO-RELATED 1 653 IPR044820 GO:0005096
Cca08g00180 653 MobiDBLite consensus disorder prediction 298 328 - -
Cca08g00180 653 MobiDBLite consensus disorder prediction 123 142 - -
Cca08g00180 653 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Cca08g00180 653 SMART arf_gap_3 12 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00180 Cca-Chr8 2521686 2530268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00180 12 153 C2H2 Transcription Factor Family AT4G21160 29.032 2.85e-11 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00180 08 2521686 2530268 Cca08g00180 08 2521686 2530268 ECH