Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00177 ATGCATTATTTCATCCCCACTCTCTCATATACGCTCCTCCACGCCACACACAGTTCCAAAATCCCTAGCCTACACAACACACACTCTTTCTCTTTCTCTTACCCTAGCAGTAGCAGATCTCAATTTGCATTTGCATTTGCATTTGTGGATGCATCAGATGCCGCATGTGAGATGAGGAAGAAAACCTTTTCCCACGTCTCACtctctcttctcttcctcttcttcttcctcttcCTAGTACCACACACTCTCTGTGCCTCCGCAGCAATCTCGCACAATGGACCTCTCACCGACGCCCAAGCCACCTACATCAAGCACCGTCAGCTTCTCTACTACAAGGACGACTTCGGCGACAGAGGGGAGAACGTGACCGTAGATCCTTCCTTTGTCTTCCCCAATGATCGATTACGAAACGCCTACATAGCTTTGCAAGCGTGGAAGCAAGCCATTCTCTCCGATCCAAACAACCTCACGCACAACTGGCTGGGACCCAATGTCTGCAACTACACCTTCGTCTTCTGCGCCCCTGCGCCGGACAATCCTAAGATCCTCACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATACTTGCCGGAGGAGCTCGGTTTGTTGACGGACCTGGCGCTGTTGCACATCAACAGCAACCGCTTCTGCGGCACCCTGCCGCACAAGTTCGAACGGTTAAAGCTCCTCTTCGAGTTGGATCTCAGCAACAACCGCTTCGCTGGCAAGTTCCCCGACGTGGTGCTGCGTCTGCCGCAGCTCAAGTTTCTAGATCTGAGGTTTAACGAATTCGAAGGGACGGTGCCCAAGGAGCTCTTCGACAAGGACCTGGACGCGATCTTCATCAACCACAACCGCTTCGTCTTCGACCTGCCGGACAATTTCGGAAACTCGCCGGTGTCGGTGATTGTGCTGGCCAACAACCGCTTCCACGGATGCGTGCCGGCGGGAATCGGCAACATGACGAGGCTGAACGAGATTATTCTGATGAACAACAATTTCAGGTCGTGTCTCCCGGAGGAGGTAGGGTTGCTGAAGAATCTGACGGTGTTCGATGTGAGCTTTAACCAGTTGCTAGGGCCGTTGCCGGAGGCCATTGGAAGCGCGGCCCTTCCAGCGCTCTGCTGGACAATGTAA 1149 0.5248 MHYFIPTLSYTLLHATHSSKIPSLHNTHSFSFSYPSSSRSQFAFAFAFVDASDAACEMRKKTFSHVSLSLLFLFFFLFLVPHTLCASAAISHNGPLTDAQATYIKHRQLLYYKDDFGDRGENVTVDPSFVFPNDRLRNAYIALQAWKQAILSDPNNLTHNWLGPNVCNYTFVFCAPAPDNPKILTVAGIDLNHGDIAGYLPEELGLLTDLALLHINSNRFCGTLPHKFERLKLLFELDLSNNRFAGKFPDVVLRLPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCVPAGIGNMTRLNEIILMNNNFRSCLPEEVGLLKNLTVFDVSFNQLLGPLPEAIGSAALPALCWTM 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00177 382 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 65 372 - -
Cca08g00177 382 Pfam Leucine rich repeat 210 267 IPR001611 GO:0005515
Cca08g00177 382 Gene3D Ribonuclease Inhibitor 300 376 IPR032675 -
Cca08g00177 382 SUPERFAMILY L domain-like 140 372 - -
Cca08g00177 382 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 65 372 - -
Cca08g00177 382 Gene3D Ribonuclease Inhibitor 140 299 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00177 Cca-Chr8 2491364 2492691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00177 87 372 Leucine-rich Repeat extension Gene Families AT3G24480 76.573 8.67e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00177 - - gmx:106799218 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00177 08 2491364 2492691 Cca08g00177 08 2491364 2492691 ECH