Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00175 ATGGGTTCCATAGGTAACGCCGAGGTTCACAATCACCACCATGATAATGACAACAAAGATCATTATCATGGGGTAAATTTTTCGTCCCAAAGAACATTTGGGACGAAACTAAAGACGGGGTTGAAGGAAGCGTTGTTTCCTGACGACCCCTTTAGACAGTTCAAGAACGAGGAGAAGACATCGAGGAGGGTGATGAAAGGGGTGCAGTACTTCATCCCTATCTTTGAGTGGCTCCCAACTTACAATTGGCGCCTCTTTTGCTCCGACTTGATCGCTGGTTTAACCATCTCAAGCCTTGCCATCCCTCAAGGCATTAGCTATGCCAAACTTGCAGACCTTCCTCCTCTCATTGGCCTTTATTCGAGCTTTGTCCCACCTCTAGTATATGCTGTTTTTGGGAGTTCAAGGCACATGGCAGTGGGGACGATAGCAGCAGCATCGTTGCTCATTGGTCAAACCATACAAACGGTGGCAGACCCAGTTGAAGACCCAACGTTGTATCTTCATTTGATTTTCACCACCACCTTTATCACCGGGGTTTTCCAGGCTTGTTTGGGTATTTTCAGGTTGGGGATATTGGTGGATTTCTTTTCGCATTCTACCATCAATGGCTTCATGGGAGGAACAGCAGTAATTCTGATCCTCCAACAACTGAAGGGCATATTTGGCATGAAACATTTCTCATCCAAAACGAACTTGGTGGCAGTGGTGAAGGGCATCGTGACCAATAGACATGAGATAAGGTGGGAACCTACAGTTCTTGGCGTGATCTTCGTTGCTTTCTTGCAATTTACGCGGCACCTGAGGAATAAGAATCCAAAACTCTTTTGGGTGCCGGCAATAGCTCCAATGGTGACTATAGTAGTTGCTGGCGTTTTCACATACCTAGTCAAGGGCCAACATCATGGAATTCAAATTGTGGGGCATCTAGATAAAGGATTAAATCCCTTGTCCATCCACTATTTGAACTTTAATAGTAAATATTTACCAGCAGTTATGCAAGCTGGTCTTATCACAGGCGTGTTGTCATTAGCGGAAGGAATAGCAATAGGAAGAAGCTTTGCTGTTACTGATAATACACCTCATGATGGGAACAAAGAAATGGTCGCTTTCGGCCTTATGAACTTATTCGGCTCTTTTACTTCATGTTACCTGACTAGTGGACCGTTTTCCAAGACTGCTGTGAATTACAATGCAGGGTGTAAGACAGCCATGGCAAACGTGGTCCAAGCAATAGTGATGGCCCTCACACTGCAATTTTTGGCGCCACTATTTGGCTACACCCCTCTTGTTGCTCTCTCAGCTATTATTATATCTGCCATGCTTGGACTCATTCATTACGAAGAAGTTATCCATCTCTACAAAGTTGACAAGTTTGATTTTGTTATTTGCATGGCTGCCTTCCTTGGAGTCATCTTTCTAAGCATGGATATTGGCCTCATGATTTCTGTTGGACTTGGGGTTCTTAGAGCACTGTTATATGTGGCTAGACCTGCGCCGTGCAAGCTTGGAAAGTTACCTGAAATAGAATTATATAGAGACACTGAGCAATACAATGTTTCAACATTCCCAGGAGTTCTTGTTATACAACTTGGTTCTCCCGTTTATTTTGCAAATTCTGAGTATGTCAAAGAAAGGATTATGAGGTATATTCGAAGTGAGCAAAGTTCTACAGGAGATGTTGTTGAACACGTCGTACTCGAATTATCAGGAGTGACATCCATTGACACAACTGCTATTAAAGGATTGGATGAGACAGTTAAAATATTGGGAAAGAATGCAATTAAGGTTTTGTTTGTTAACCCGAGGCTGGAGGTGATGGAGAAGCTTTTAGCATCCAAATTTGTTGACAAAATTGGGAAGGAGTCATTCTATCTAACATTGGATGATGCAGTGATGGCAAGTCAATATTCTCTTCGTTCATCAAAGGCTAATAATAATGAAGAGGTTATGGCTCAAGAAAGTCATCATGCCTAA 1977 0.4289 MGSIGNAEVHNHHHDNDNKDHYHGVNFSSQRTFGTKLKTGLKEALFPDDPFRQFKNEEKTSRRVMKGVQYFIPIFEWLPTYNWRLFCSDLIAGLTISSLAIPQGISYAKLADLPPLIGLYSSFVPPLVYAVFGSSRHMAVGTIAAASLLIGQTIQTVADPVEDPTLYLHLIFTTTFITGVFQACLGIFRLGILVDFFSHSTINGFMGGTAVILILQQLKGIFGMKHFSSKTNLVAVVKGIVTNRHEIRWEPTVLGVIFVAFLQFTRHLRNKNPKLFWVPAIAPMVTIVVAGVFTYLVKGQHHGIQIVGHLDKGLNPLSIHYLNFNSKYLPAVMQAGLITGVLSLAEGIAIGRSFAVTDNTPHDGNKEMVAFGLMNLFGSFTSCYLTSGPFSKTAVNYNAGCKTAMANVVQAIVMALTLQFLAPLFGYTPLVALSAIIISAMLGLIHYEEVIHLYKVDKFDFVICMAAFLGVIFLSMDIGLMISVGLGVLRALLYVARPAPCKLGKLPEIELYRDTEQYNVSTFPGVLVIQLGSPVYFANSEYVKERIMRYIRSEQSSTGDVVEHVVLELSGVTSIDTTAIKGLDETVKILGKNAIKVLFVNPRLEVMEKLLASKFVDKIGKESFYLTLDDAVMASQYSLRSSKANNNEEVMAQESHHA 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00175 658 ProSiteProfiles STAS domain profile. 516 635 IPR002645 -
Cca08g00175 658 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271|GO:0008272
Cca08g00175 658 CDD STAS_SulP_like_sulfate_transporter 522 628 - -
Cca08g00175 658 Pfam Sulfate permease family 86 467 IPR011547 GO:0016021
Cca08g00175 658 Pfam STAS domain 518 631 IPR002645 -
Cca08g00175 658 Gene3D STAS domain 498 638 IPR036513 -
Cca08g00175 658 TIGRFAM sulP: sulfate permease 73 631 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca08g00175 658 PANTHER SULFATE TRANSPORTER 18 645 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca08g00175 658 PANTHER SULFATE TRANSPORTER 3.5-RELATED 18 645 IPR030316 GO:1902358
Cca08g00175 658 SUPERFAMILY SpoIIaa-like 517 632 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00175 Cca-Chr8 2431602 2439453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00175 23 643 Inorganic Solute Cotransporters AT5G19600 60.256 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00175 K17471 - gmx:100789107 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00175 08 2431602 2439453 Cca08g00175 08 2431602 2439453 ECH