Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00169 ATGGACGACATGGAAGACGACGCCAGGTACCCTCCCAAGTCCTTCTCCCTCATCCGCCAGAACCCCTCCCACCGCCATAAACACCCCCTCCGCGGCGGCGCCGCCTCCTACCACCGCCCACTCCCCCCGCGCTACGAGGAGCCCGACGACTTCGACGACGGAAACGAAGACCCCGACGATTTCGACGACGCGGAGGACGACGAGGAGAACGGGTACGACGGCGCAATGGAGGAAAACGACGTGGCCTATCCCCGGATCCCGAAGAAGCGGAAGGTATCGGTAACGGGTGGAGGAAACTCGTACGAGTTCGCGCCACGTGTGAAATTCTCGTACGGTTCGGGGTCGGGTTCGGAGGAGTGGAACGAGCACGAGACTTTGGTGCTGTTGGAGGTGTGGGGCGAGAAGTTTCTCCAGTTGGGGAGGAACAGTTTGAGGTTAGAGGAATGGAACGAGGTTGCAGAGAAGGTTTCTGAGGAACTGAAAGTTGAGAGAAGCGTGGCGCAGTGTAGAAGCGTGTTGGACAAGCTGAAACGAAGGTACAAGAAGGAGAAGGCGAGAGTGGACGAAATGGGCCTGGGCTCGTGTAAGTGGGCCTTCTTCAAGAAGATGGACATGTTTATGGCTTCCTCCGCACGGCAAGAGTATGGTCTTGCTTGTGGGGTGGATTCTGGGGAGTATGTGTTTATGAACACTAGGGTTTACTTGAACAGGTCCAATGGTTTCGATGAGATGAGGGACAGTCCTGGGGAGTCCGAGAGTgatgaggatgacgacgacgattgcgccgccgacgaccaccacgccgatgaggaggacCAGACTTCGTTCCGGGCTTTGGCCGATTCTATTCACAAGTTTGGCAAGATATATGAGAAGATTGAGAACAGCAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGCTCGATTTCAACAGGGAGTTGGAGCTGCAGAAGAAGCAGATTCTCGAGAGGGCTCAGGCTGAGATTGCCAAGATACAagaaggggaccaggaggtggaggaggaggaggaggacgaTACCGACACTTCCGCCGAGAATCTCAGTGAATGA 1074 0.5019 MDDMEDDARYPPKSFSLIRQNPSHRHKHPLRGGAASYHRPLPPRYEEPDDFDDGNEDPDDFDDAEDDEENGYDGAMEENDVAYPRIPKKRKVSVTGGGNSYEFAPRVKFSYGSGSGSEEWNEHETLVLLEVWGEKFLQLGRNSLRLEEWNEVAEKVSEELKVERSVAQCRSVLDKLKRRYKKEKARVDEMGLGSCKWAFFKKMDMFMASSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESDEDDDDDCAADDHHADEEDQTSFRALADSIHKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQEGDQEVEEEEEDDTDTSAENLSE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00169 357 Pfam Myb/SANT-like DNA-binding domain 118 205 IPR044822 -
Cca08g00169 357 MobiDBLite consensus disorder prediction 248 266 - -
Cca08g00169 357 PANTHER ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE FAMILY PROTEIN 41 353 - -
Cca08g00169 357 Coils Coil 166 186 - -
Cca08g00169 357 MobiDBLite consensus disorder prediction 1 95 - -
Cca08g00169 357 Gene3D - 120 182 - -
Cca08g00169 357 Coils Coil 290 346 - -
Cca08g00169 357 MobiDBLite consensus disorder prediction 239 273 - -
Cca08g00169 357 MobiDBLite consensus disorder prediction 49 75 - -
Cca08g00169 357 MobiDBLite consensus disorder prediction 336 357 - -
Cca08g00169 357 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 41 353 IPR044823 -
Cca08g00169 357 MobiDBLite consensus disorder prediction 333 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00169 Cca-Chr8 2349531 2352970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00169 276 335 Trihelix Transcription Factor Family AT3G14180 43.333 6.09e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca08g00169 Myb_DNA-bind_4 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00169 - - ccaj:109813475 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00169 08 2349531 2352970 Cca08g00169 08 2349531 2352970 ECH