Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00166 ATGAAAACAGAATTTGTGGACATCCCCTCCGCGAGCCAGCGAGAACAAATTGTCAGGCACCCCAGGGGCCGCCCTCCCGGCTCCAAAAACAATCCCAAACCGCCGCTCGTTATAACCCGGGAGCCCGAGCCCACTATGACCCCTTTTATTTTAGAAATCCCGGGCGGGAGCGACATGGTCGAGGCCCTGGCCCGGTTCAGTCGCAGAAAGAACACGGGCCTATGCGTCCTGTCCAGTTCAAGAATCGTCACCAACATCACTCTCTGTCAACCCTCCGTCACCCTGGGGGCCACCGTCACTTTCCACGACCGCTTTGATGTCCTCTCCCTCTCCGCCATGCTCCTCCTCCACGCCTCGTCGGCGATCGCGATCTCCGCCTTCGCCGTCTCACTCGCCAGCCCGTAG 405 0.6025 MKTEFVDIPSASQREQIVRHPRGRPPGSKNNPKPPLVITREPEPTMTPFILEIPGGSDMVEALARFSRRKNTGLCVLSSSRIVTNITLCQPSVTLGATVTFHDRFDVLSLSAMLLLHASSAIAISAFAVSLASP 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00166 134 Gene3D - 47 133 - -
Cca08g00166 134 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 15 134 - -
Cca08g00166 134 SUPERFAMILY AF0104/ALDC/Ptd012-like 45 118 - -
Cca08g00166 134 CDD DUF296 47 111 IPR005175 -
Cca08g00166 134 ProSiteProfiles PPC domain profile profile. 43 134 IPR005175 -
Cca08g00166 134 MobiDBLite consensus disorder prediction 1 41 - -
Cca08g00166 134 MobiDBLite consensus disorder prediction 27 41 - -
Cca08g00166 134 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 134 IPR014476 GO:0003680
Cca08g00166 134 Pfam Plants and Prokaryotes Conserved (PCC) domain 48 121 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00166 Cca-Chr8 2314216 2314727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00166 16 134 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 54.839 2.08e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00166 - - ccaj:109796500 174.096