Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00165 ATGCCGAATCGATCGGCGGGGGTGATAAGGCAGGACTGGGAGCCGGTGGTGCTGCACAAGGCGAAGCCGAAGGCGCAGGACCTGCGTGACCCTAAGGCGGTGAACGCGGCGCTGCGGTCGGGGGCGGAGGTGGCGACGGTGAAGAAGTTCGACGGCGGCGCCAACAAGAAGTCGGGCGGCAGTCCGGCGGTGTACGCGAGGAAGCTGGACGAGGTGACGGAGGCGGCGTCGCTGGAGCGCGTGGCGGGGGAGGTGCGGCAGGCGATCCAGAAGGCGCGCGTGGAGAAGAAGATGAGCCAAGCGGAGCTTGCGAAGCAGATAAACGAAAGGACGCAGGTGGTGCAGGAGTACGAGAACGGGAAGGCGGTGCCGAACCAGGCCGTGCTGGCAAAGATGGAGAGGGTGCTTGGTGTTAAGCTGAGGGGCAAAGTCGGAAAGTGA 441 0.6531 MPNRSAGVIRQDWEPVVLHKAKPKAQDLRDPKAVNAALRSGAEVATVKKFDGGANKKSGGSPAVYARKLDEVTEAASLERVAGEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKVGK 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00165 146 ProSiteProfiles Cro/C1-type HTH domain profile. 89 143 IPR001387 -
Cca08g00165 146 Coils Coil 89 109 - -
Cca08g00165 146 Pfam Helix-turn-helix 89 140 IPR001387 -
Cca08g00165 146 Gene3D - 73 146 IPR010982 GO:0003677
Cca08g00165 146 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 145 - -
Cca08g00165 146 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 145 - -
Cca08g00165 146 Pfam Multiprotein bridging factor 1 11 81 IPR013729 -
Cca08g00165 146 SMART mbf_short4 88 143 IPR001387 -
Cca08g00165 146 SUPERFAMILY lambda repressor-like DNA-binding domains 85 140 IPR010982 GO:0003677
Cca08g00165 146 CDD HTH_XRE 87 140 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00165 Cca-Chr8 2312867 2313307 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Cca08g00165 MBF1 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00165 K03627 - rcu:8284822 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00165 08 2312867 2313307 Cca08g00165 08 2312867 2313307 ECH