Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00164 ATGGCTGGTGTCTCCAATGGCCACGACGGTTCCTCCTTCAAGATGCCCTCCATCAAGTTCACCAAGCTCTTCATCAATGGACAATTTGTTCATTCTATTTCAGGAAAGGAGTTTGAGACAATAGATCCAAGGACAGAAGAGGTGATTACGAAGGTGGCAGAGGGAGCAAAAGAAGACATCGATGTTGCTGTCAAAGCGGCACGTGTTGCATTCGACTATGGTCCATGGCCTCGCATGCCCGGCGCTGAAAGAGCAAGAATCATGATGAAATGGGCAGATTTAATAGATGAAAACGCAGAAGAAATAGCAAAACTGGATGCCATTGATGCAGGAAAGTTGTACCATAGGTGTAAGGCTTTTGAAATTCCTGCAGCAGCAAATACTATACGTTACTATGCTGGTGCAGCTGATAAAATTCATGGAGAGGTATTAAAACCAGCACGAGAGTTCCATGCATATACTTTGATGGAACCAATTGGAGTTGTGGGACACATCATTCCTTGGAATTTTCCTAGCTCCATGTTTGTCTCCAAGGTTGCTCCTTCCTTGGCTGCTGGTTGCACAATGACACCTCTCTCAGCTTTGTTTTATGCTCATCTAGCTAAACTGGCTGGAATTCCAGATGGAGTGCTCAATGTAGTACCCGGATTTGGCCCAACTGCAGGTGCTGCAATATGCTCACACATGGAAATTGACAAGGTCAGTTTTACGGGTTCAACAGAAGTAGGGCGTGAAGTAATGCGTGCTGCAGCTAATAGTAATTTGAAACCAGTTTCGCTTGAACTAGGAGGCAAGTCACCCCTCGTAGTTTTTGATGATGCTGATCTAGATAAAGCCGTTGACCTTGCTCTCTTGGGTGTATTGTATAACAAGGGAGAAATTTGTGTTGCAGGTTCCCGGGTATTTGTTCAGGAAGGGATCTATGATGAATTTGAGAAGAAGCTGGTAGAAAAGGCAAAAGCTTGGGTTGTTGGGGATCCTTTTGATCCCAAAGTTCAACAAGGGCCTCAGGTTGACAAGAAGCAATTTGAAAAAATCCTTTCCTATATTGAGCATGGAAAAAGAGAAGGAGCCACCCTTTTGACAGGGGGCAAAAGAGTGGGCAACAAGGGTTACTACATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTAATTGCCCAAGATGAAATATTTGGTCCTGTGATGGCACTGATGAAGTTTAAGACCATTGAGGAAGCAATTACAAATGCTAACAACACTAGGTATGGCCTAGCAGCAGGCATTATGACCAAGAGTTTGGATACAGCAAACACTATGTCAAGGTCAATTCGTGCAGGCATTATTTGGATAAACTGTTATTTTATCTTTGGAAATGATATTCCTTATGGAGGTTATAAGATGAGTGGGTTTGGAAGAGATTTAGGATTGGAAGCCCTATACAAATACCTACAAGTTAAATCTATTGTAACACCCATTTACAATTCTCCTTGGCTTTAA 1485 0.4276 MAGVSNGHDGSSFKMPSIKFTKLFINGQFVHSISGKEFETIDPRTEEVITKVAEGAKEDIDVAVKAARVAFDYGPWPRMPGAERARIMMKWADLIDENAEEIAKLDAIDAGKLYHRCKAFEIPAAANTIRYYAGAADKIHGEVLKPAREFHAYTLMEPIGVVGHIIPWNFPSSMFVSKVAPSLAAGCTMTPLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAICSHMEIDKVSFTGSTEVGREVMRAAANSNLKPVSLELGGKSPLVVFDDADLDKAVDLALLGVLYNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKREGATLLTGGKRVGNKGYYIEPTIFSNVKEDMLIAQDEIFGPVMALMKFKTIEEAITNANNTRYGLAAGIMTKSLDTANTMSRSIRAGIIWINCYFIFGNDIPYGGYKMSGFGRDLGLEALYKYLQVKSIVTPIYNSPWL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00164 494 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 260 267 IPR029510 GO:0016491
Cca08g00164 494 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 4 494 - -
Cca08g00164 494 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 4 494 - -
Cca08g00164 494 SUPERFAMILY ALDH-like 14 490 IPR016161 GO:0016491
Cca08g00164 494 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 482 IPR016162 GO:0016491
Cca08g00164 494 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 288 299 IPR016160 GO:0016491
Cca08g00164 494 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 264 453 IPR016163 GO:0016620
Cca08g00164 494 Pfam Aldehyde dehydrogenase family 31 484 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00164 Cca-Chr8 2281163 2308635 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00164 3 494 Aldehyde Dehydrogenase Gene Family AT3G24503 69.800 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00164 K12355 - gmx:100783920 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02682 09 52410632 52415039 Cca08g00164 08 2281163 2308635 PCT