Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00161 ATGGAAAATCTCAGCAATGGCTACAGCCACTTGAAATCCTTTGTCAAGATTCCAACAGTAAAGTTTACCAAGCTTTTCATCAATGGACAATTTGTAGATTCTGTTTCAGGGAAAACGTTCGAAACTGTTGATCCAAGAACAGAGGAAGTGATTGCTGAAATAGCAGAGGCTACCAAAGAAGATGTTGATATTGCTGTGAAGGCTGCACGTGAGGCTTTCGATTTTGGTCCATGGCCACGCATGCCTGGTGCTGAAAGAGCAAAGATTATGCTAAAATGGGCAGAGCTAGTTGAACAGAACGTAGAAGAAATAGCAGCATTGGATACCATTGATGGAGGAAAGCTATTCAGTTGGTGTAAGGATGTGGATGTTCCTGAAGCATCAAAGATCCTGCGTTACTATGCTGGCGCTGCTGACAAAATTCATGGAGATGTGTTCAAAACATCTCGTAACCTCCACTTGTATTCTCTCATGGAACCTGTTGGTGTTGTTGGGCACATTATCCCTTGGAATTTCCCCACGGTCATGTTTTTCGCTAAGGTCGCCCCGGCCTTGGCTGCTGGCTGCACCATGGTCATCAAGCCTGCAGAGCAAACACCACTCTCATCACTCTTTTATGCTCATCTTGCTAAGCTGGCTGGTATCCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCTCAATTGCTGGGGCTGCAATAAGCTCGCATATGGACATTGATGCGGTCAGTTTTACAGGTTCAACAGAAACAGGTCGTAAAATAATGCAGGCTGCGGCCTTGAGCAATTTGAAACCTGTTTCACTTGAATTAGGAGGTAAGTCACCAGTTTTGATTTTTGATGATGCTGATGTAGACAACGCTGTTGACCTTGCTCTCTTTGGCATCCTACACAACAAGGGAGAAATTTGTGTTGCATTCTCTAGAGTTTTTGTCCAAGAAGGGATTTATGATGAATTTGAGAAGAAGGTAGTGGAGAAGGCTAAAACTTGGGTAGTGGGAGACCCTTTTGATCCTAAAGTTCAGCAAGGACCCCAAACTAGTAAGGCACAATTCGATAAAATTCTTTCCTACATTGAGCATGGAAAGAGAGAAGGAGCCACACTATTAACTGGGGGTAAGCCAGCTGGCAACAAGGGATACTATATTGAGCCTACCATTTTTGCCAATGTTAAGGAGGACATGCTAATTGCACAGGAGGAAATATTTGGACCTGTGATGGCACTTTCTAAATTCAAGAACATTGAGGATGCAATTAAGAAAGCCAACAGCTCCAAATATGGCCTAGCAACAGGGATTGTGACCAAGAACTTGGATATTGCCAACACTGTAACAAGGTCCATTCGTGCAGGCATCGTTTGGATCAATTGCTTCTTTGCCTTTGATATTGACTGCCCTTTTGGAGGGTATAAGATGAGTGGTTTTGGAAGAGATTATGGATTGGAAGCCCTTCATAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCTTGGCTTTGA 1512 0.4325 MENLSNGYSHLKSFVKIPTVKFTKLFINGQFVDSVSGKTFETVDPRTEEVIAEIAEATKEDVDIAVKAAREAFDFGPWPRMPGAERAKIMLKWAELVEQNVEEIAALDTIDGGKLFSWCKDVDVPEASKILRYYAGAADKIHGDVFKTSRNLHLYSLMEPVGVVGHIIPWNFPTVMFFAKVAPALAAGCTMVIKPAEQTPLSSLFYAHLAKLAGIPDGVLNVVPGFGSIAGAAISSHMDIDAVSFTGSTETGRKIMQAAALSNLKPVSLELGGKSPVLIFDDADVDNAVDLALFGILHNKGEICVAFSRVFVQEGIYDEFEKKVVEKAKTWVVGDPFDPKVQQGPQTSKAQFDKILSYIEHGKREGATLLTGGKPAGNKGYYIEPTIFANVKEDMLIAQEEIFGPVMALSKFKNIEDAIKKANSSKYGLATGIVTKNLDIANTVTRSIRAGIVWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSPWL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00161 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491
Cca08g00161 503 SUPERFAMILY ALDH-like 14 499 IPR016161 GO:0016491
Cca08g00161 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 8 503 - -
Cca08g00161 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
Cca08g00161 503 Pfam Aldehyde dehydrogenase family 31 493 IPR015590 GO:0016491
Cca08g00161 503 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE 8 503 - -
Cca08g00161 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620
Cca08g00161 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00161 Cca-Chr8 2232016 2236937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00161 4 503 Aldehyde Dehydrogenase Gene Family AT3G24503 68.064 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00161 K12355 - gmx:100784449 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02681 09 52401380 52406711 Cca08g00161 08 2232016 2236937 PCT