Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00156 ATGCATTATTTCATCCCCACTCTCTCATATACGCTCCTCCACGCCACACACAGTTCCAAAATCCCTAGCCTACACAACACACACTCTTTCTCTTTCTCTTACCCTAGCAGTAGCAGATCTCAATTTGCATTTGCATTTGCATTTGTGGATGCATCAGATGCCGCATGTGAGATGAGGAAGAAAACCTTTTCCCACGTCTCACTCTctcttctcttcctcttcttcttcctcttcctAGTACCACACACTCTCTGTGCCTCCGCAGCAATCTCGCACAATGGACCTCTCACCGACGCCCAAGCCACCTACATCAAGCACCGTCAGCTTCTCTACTACAAGGACGACTTCGGCGACAGAGGGGAGAACGTGACCGTAGATCCTTCCTTTGTCTTCCCCAATGATCGATTACGAAACGCCTACATAGCTTTGCAAGCGTGGAAGCAAGCCATTCTCTCCGATCCAAACAACCTCACGCACAACTGGCTGGGACCCAATGTCTGCAACTACACCTTCGTCTTCTGCGCCCCTGCGCCGGACAATCCTAAGATCCTCACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATACTTGCCGGAGGAGCTCGGTGGCACCAAATTTAAATTAGGCACTACACTTCCATTTGCGACTCGGTGGGCTTTACTTCGCCATAGGCCCATACCCAATTTTCATTCTATTCATCACCCAACTCAACAATCAAACCAAACCAAACCATTTCAGGGTTTTGTTCGTTTTGCCAACACTGCTCTTCACCACACCAAATCTGAGCAGCTGAGACATTTTGTTTCCAACTCAGTTTCACGGCTCCTCTGCACTTCTTCGACTCAGCCACAACGCGAAAACCCTATCAACGAACAAGCACAGGCACCTCAAGAATCTCCCCATGATGAGAGCAAACAAAGCCATGAGCCCAAAGAAAAGGATGAAGATAACGATAGTTATAACAAAGAAACAGGTGAGATAGGTGGACCCAAAGGGCCCGAGCCCACTAGTTCTGATTGCATGACTAGTCGGGTGGTGCTAGCTGAGTGCTCAGAATTTTCTCTCTTCTTCTCCTCCTTCATTGTTCAAGCTTTTTGtgcggagtaa 1116 0.4722 MHYFIPTLSYTLLHATHSSKIPSLHNTHSFSFSYPSSSRSQFAFAFAFVDASDAACEMRKKTFSHVSLSLLFLFFFLFLVPHTLCASAAISHNGPLTDAQATYIKHRQLLYYKDDFGDRGENVTVDPSFVFPNDRLRNAYIALQAWKQAILSDPNNLTHNWLGPNVCNYTFVFCAPAPDNPKILTVAGIDLNHGDIAGYLPEELGGTKFKLGTTLPFATRWALLRHRPIPNFHSIHHPTQQSNQTKPFQGFVRFANTALHHTKSEQLRHFVSNSVSRLLCTSSTQPQRENPINEQAQAPQESPHDESKQSHEPKEKDEDNDSYNKETGEIGGPKGPEPTSSDCMTSRVVLAECSEFSLFFSSFIVQAFCAE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00156 371 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 65 205 - -
Cca08g00156 371 MobiDBLite consensus disorder prediction 281 303 - -
Cca08g00156 371 MobiDBLite consensus disorder prediction 281 343 - -
Cca08g00156 371 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 65 205 - -
Cca08g00156 371 MobiDBLite consensus disorder prediction 304 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00156 Cca-Chr8 2193837 2208801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00156 87 205 Leucine-rich Repeat extension Gene Families AT3G24480 74.790 2.54e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00156 - - gmx:106799218 223.016