Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00151 ATGATGGaacacaacatcatcgtcaacaccaacgccaacaacaacGTGATCGcaccgtttgtcattaaaacgtacaacatggtgaacgatcccaccaccgataaactcatcacgtggggcccacacaacaacagcttcgtcgtcctcgaccccctcgacttctctcactccctcctccctgccttcttcaagcacaacaacttctccagcttcgttcgccaactcaacacctacGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCACTTGCTGAGGAACATCGTGCGGAGGAAGCACGGCGGAGGGAGGAGCAATTCGCATCCGTTGAAGGTGGAGGAGTTGGACGACGAAGCCATGGTTATGGAGATAGCGAGGTTGAAGGAGGAACAGAAAGCGTTGGAACAAGAGCTTCAAGGAATGAACAAAAGGTTAGAAACAACCGAGAAACGACCCCAACAAATGATGGCTTTTCTCTGCAAAGTCGTCGAAGACCCTCAAGTTCTCTCTCGAATGCTTAAGGAGAGAGAAAAAAAACACATCGGAGACAAAAGGCGCCGCCTCATACCACCGCCGTTGACGGCTGCGCCGGCAACCACGTCCTCATCGTCGTCATCCGGTGTCAAGACGGAGTTCGAAGAGGACGAGGGTAATTACATGATGTCTTCGTCGCCAGAGACGGGGTTTGAaatagattataataatagtaataattatGGGTATGATTGCGCCGCCATGCCGGCGCCGTTGACGGTGGTGTCTCCGGAGGCGGCGATGGGAGGAGGCTATGTGGGGCGTGGGGAGTTTTTTGGGGAAATGGCGGCGGAAGGGAATACTCTGCCGCCTTATCCGTTTTCTCTTTTGGAAGGTGGCTTTTAG 912 0.398 MMEHNIIVNTNANNNVIAPFVIKTYNMVNDPTTDKLITWGPHNNSFVVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRSNSHPLKVEELDDEAMVMEIARLKEEQKALEQELQGMNKRLETTEKRPQQMMAFLCKVVEDPQVLSRMLKEREKKHIGDKRRRLIPPPLTAAPATTSSSSSSGVKTEFEEDEGNYMMSSSPETGFEIDYNNSNNYGYDCAAMPAPLTVVSPEAAMGGGYVGRGEFFGEMAAEGNTLPPYPFSLLEGGF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00151 303 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 18 296 - -
Cca08g00151 303 Coils Coil 128 162 - -
Cca08g00151 303 Gene3D - 12 110 IPR036388 -
Cca08g00151 303 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00151 303 PRINTS Heat shock factor (HSF) domain signature 58 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00151 303 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00151 303 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 296 IPR027725 -
Cca08g00151 303 MobiDBLite consensus disorder prediction 199 233 - -
Cca08g00151 303 Pfam HSF-type DNA-binding 20 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00151 303 ProSitePatterns HSF-type DNA-binding domain signature. 59 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00151 303 SUPERFAMILY "Winged helix" DNA-binding domain 17 109 IPR036390 -
Cca08g00151 303 SMART hsfneu3 16 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00151 Cca-Chr8 2143332 2145293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00151 14 199 HSF AT4G17750 44.796 8.60e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca08g00151 HSF_DNA-bind 2.6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00151 K09419 - gmx:100794896 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00151 08 2143332 2145293 Cca08g00151 08 2143332 2145293 ECH