Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00150 ATGTGGACAGGTCTTTTTAGAAAAAAACAACCAAAAACAAAGGTTCTTAGAGAATCTGAAGTGGATGAAAGAAGTTTTGAGCCTCGTAGGAACTCATCATCCAATGTATGTAAATTTTGGGCAAGTGGCAATTGCTCATTGGGTGAAAACTGCAAGAATTTGCATTCATGGTCTGACGGAATTGTGGTTTCTCCTAATGAGGACAATTCAAAACCCATTAGAACAGTTTGGTGGACAGCCCCTCCTGAAAACTTTGTTAAAATCAACTGTGATGGAGCCATGACTTCAAATGGAAACAAAGCTGCTGCAGGAGGAGTTGCAAGGGATTTTAAGGGTGAATTTATTAGTAGTTTTTCTAGTGGCTTGAAAAACTGCAGCTCAGTGACAGAGGCTGAGTTAGAAGCTATCAAGATCGGAATGCATACAATCATATGCAGAGGCTACAAAAATTTGATCGTTGAAAGTGACTGCCATGCAGCAATTCAGCTCATCAACCGTGGAGTGGATCAAAGTCATCCTTATCATCCACATGTTTCTTCCATTCATCAACTCGCTAAGGGCATCAAACATATTCAATGGAATCATGTGTTTAGGGAAACTAATTCCGTAGCTGATAGTCTTGCTAAGCATGGCTTGTCTCTCAATCCTGACTTGGGTGTTAAACTTTTTCGATCTCCTCCTCCGTTTACATTAGCTCCTTTATCTTTGGATGAATCCGGTATAACATACCATCGTTGA 738 0.4024 MWTGLFRKKQPKTKVLRESEVDERSFEPRRNSSSNVCKFWASGNCSLGENCKNLHSWSDGIVVSPNEDNSKPIRTVWWTAPPENFVKINCDGAMTSNGNKAAAGGVARDFKGEFISSFSSGLKNCSSVTEAELEAIKIGMHTIICRGYKNLIVESDCHAAIQLINRGVDQSHPYHPHVSSIHQLAKGIKHIQWNHVFRETNSVADSLAKHGLSLNPDLGVKLFRSPPPFTLAPLSLDESGITYHR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00150 245 SUPERFAMILY CCCH zinc finger 32 56 IPR036855 GO:0046872
Cca08g00150 245 Gene3D - 85 213 IPR036397 GO:0003676
Cca08g00150 245 PANTHER OS05G0353850 PROTEIN 63 234 - -
Cca08g00150 245 SUPERFAMILY Ribonuclease H-like 84 214 IPR012337 -
Cca08g00150 245 ProSiteProfiles Zinc finger C3H1-type profile. 31 58 IPR000571 GO:0046872
Cca08g00150 245 CDD RNase_H_like 88 209 IPR044730 -
Cca08g00150 245 SMART c3hfinal6 31 57 IPR000571 GO:0046872
Cca08g00150 245 Pfam Reverse transcriptase-like 89 210 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00150 Cca-Chr8 2120275 2121012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00150 53 212 Glycoside Hydrolase AT2G33160 26.829 3.72e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca08g00150 RVT_3 2.9e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00150 - - pvu:PHAVU_006G058500g 216.083