Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00143 ATGTCAACCGCTCCAGCGCCGTCTTCGCCGCCGTCTACCAACACCACCGCGCCTCCGCCGTCAACTCCGGCTACGCCTTCCGCTCCTCCGCCCGCCACACCTTCCGCGCCACCTCCAGCAACTCCCTCGTCTCCGCCGCCGGCAATTCCGTCCTCTCCACCACCTTCAACTCCAGCGACTCCCTCCGCGCCACCTCCGTCAACCCCGGCGACTCCCTCCGCTCCTCCGCCGTCCACTCCTTCGTCCTCTCCGCCGCCTCCAAGCACGCCGTCAACCACGCCACCCGGCGGCAACACTCCGAGTCCGCCGTCTCGGAGCTCGCCCTCTCCACCGTCCGGATCGAACCGGACCACGCCGGCATCGCCGTCTTCGTCGTCGAGTATTTCGACCGGTGTGGTTGTCGGAATCGCCGTCGGCGCCGTAGCGGTTCTTCTCGTGCTTAGCATTCTCTGCATATGCTGTCGGAAGAAGAAGAGAAGACGCGACGAAGAGTACTATCCTCAgccgccgccgccgccgcGGGGACCCAAAGATGATCCATATGGTGGTCCTCCACGTCAATGGCAACAAAATGTCCAACCTCCTCAGAATCATGTGGTCTCAATGATGCCTCCTAAACCATCACCTCCGCCGGCTGCACCACCGGCCTATGCTGCTCAACCTCCGCCACCGCCACCGCCTTTCATAAGCAGCAGTGGTGGGTCAGGATCAAACTATTCGGGTGGTGAACCACTTCCTCCTCCCTCTCCAGGAATAGCATTGGGGTTCTCCAAGAGCACGTTCACGTACGAGGAGTTGGCACGTGCTACCGATGGCTTCTCCGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAGAGGGATCCTTCCCAATGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGTGGTCAAGGGGAGCGTGAGTTCCAAGCTGAGGTTGAGATAATTAGCCGTGTCCATCACAAGCACCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTCTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGGAAAAGGGCGTCCTACCATGGATTGGCCCACAAGACTAAGAATTGCTTTAGGATCTGCTAAGGGACTGGCCTATCTTCATGAAGATTGTCATCCTAAGATCATCCATCGCGATATCAAAGCTGCCAACATCCTTCTGGATTTTAAGTTTGAAGCAAAGGTTGCAGATTTCGGTCTTGCAAAGTTCTCTTCCGATGTCAACACTCATGTTTCTACTCGAGTGATGGGAACTTTTGGGTATCTGGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAGTCAGATGTTTTCTCCTATGGAGTCATGCTCCTCGAGTTGATAACTGGACGGAGGCCAGTTGATAAAAATCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCGAGGCCTTTGCTCACACGAGCTTTGGAAGAGGACGATTTTGATTCTCTGATCGACCCCAGGCTCATGAATGAATATGATCCTAATGAGATGGCACGTATGGTGGCATGTGCCGCGGCTTGCACGCGTCATTCAGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTACGTGCTCTGGAAGGAGATGTGTCTCTTGCAGATCTTAACGAAGGAATCAGACCTGGACACAGCACTATGTACAGTTCTCATGAAAGCTCAGATTATGACACTGTACAGTACAAGGAAGACATGAAAAAGTTCAGGAAAATGGCACTGGGGACTCAGGAGTATGGTGCAAGCAGTGAGTACAGTGCAGCCACAAGTGAGTATGGTTTAAACCCATCTGGCTCAAGCAGTGAAGCACAGAGTCGCCAAACCACAAGGGAAATGGAAATGAGAAAGATGAGGAACAGTCAAGACAAAAGAGATAGAAAGCTAGAAAGTGGTACATCATTGCGTTTGGAGAAAGAAGAAACGTGGTGGCTCCAAGAACCCCACACGtctaacttaaccctacaaaataaacttataagAACTGAAACGAATCCTGGGCTTGAGGTAAGTTATGGTTCAACCAATTGGATGAAGGCCACGAGGAGCATTGATACATTGTATGGCTCGCGAAATAAGGGTGGTCTTCTTGTTTTGGAGTGCAAGGAAAACACAGATACAGAGCATTGTGGCTGTAGTGAAGCCACAGTGGCGCACTACTTTGTTAATAGCAAGGGAACGAGTTTTGAGAGATCAACTGAAACATATGTTGGTCTTTCTGTGGTGGCAAAGACTTGTGTGTTGAGTGGTAAAATGGATACAAAGGTGGAGGGTCCTAAGCAACACCATGTTTCTGCATTATTTCACATGTTTGATGAAGTGAATAGAACCGAGATTTGGAAGCCTACCATGTGCCCTCATTGTGATGACATTAGGAAGGTATAA 2436 0.5016 MSTAPAPSSPPSTNTTAPPPSTPATPSAPPPATPSAPPPATPSSPPPAIPSSPPPSTPATPSAPPPSTPATPSAPPPSTPSSSPPPPSTPSTTPPGGNTPSPPSRSSPSPPSGSNRTTPASPSSSSSISTGVVVGIAVGAVAVLLVLSILCICCRKKKRRRDEEYYPQPPPPPRGPKDDPYGGPPRQWQQNVQPPQNHVVSMMPPKPSPPPAAPPAYAAQPPPPPPPFISSSGGSGSNYSGGEPLPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKNQTFMEDSLVDWARPLLTRALEEDDFDSLIDPRLMNEYDPNEMARMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSTMYSSHESSDYDTVQYKEDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRKMRNSQDKRDRKLESGTSLRLEKEETWWLQEPHTSNLTLQNKLIRTETNPGLEVSYGSTNWMKATRSIDTLYGSRNKGGLLVLECKENTDTEHCGCSEATVAHYFVNSKGTSFERSTETYVGLSVVAKTCVLSGKMDTKVEGPKQHHVSALFHMFDEVNRTEIWKPTMCPHCDDIRKV 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00143 811 ProSiteProfiles Protein kinase domain profile. 273 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00143 811 MobiDBLite consensus disorder prediction 626 649 - -
Cca08g00143 811 MobiDBLite consensus disorder prediction 110 128 - -
Cca08g00143 811 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00143 811 Gene3D Phosphorylase Kinase; domain 1 253 348 - -
Cca08g00143 811 Gene3D Transferase(Phosphotransferase) domain 1 349 556 - -
Cca08g00143 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 393 405 IPR008271 GO:0004672|GO:0006468
Cca08g00143 811 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Cca08g00143 811 SUPERFAMILY Protein kinase-like (PK-like) 250 546 IPR011009 -
Cca08g00143 811 MobiDBLite consensus disorder prediction 1 128 - -
Cca08g00143 811 MobiDBLite consensus disorder prediction 608 625 - -
Cca08g00143 811 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 21 629 - -
Cca08g00143 811 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 21 629 - -
Cca08g00143 811 MobiDBLite consensus disorder prediction 159 253 - -
Cca08g00143 811 MobiDBLite consensus disorder prediction 608 649 - -
Cca08g00143 811 Pfam Protein tyrosine and serine/threonine kinase 278 546 IPR001245 GO:0004672|GO:0006468
Cca08g00143 811 MobiDBLite consensus disorder prediction 200 230 - -
Cca08g00143 811 MobiDBLite consensus disorder prediction 11 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00143 Cca-Chr8 1988818 1996618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00143 81 628 Trihelix Transcription Factor Family AT1G70460 50.364 6.96e-172 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca08g00143 PK_Tyr_Ser-Thr 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00143 - - gmx:100781944 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00143 08 1988818 1996618 Cca08g00143 08 1988818 1996618 ECH