Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00140 ATGCGTCGTTGTCGCTGCCGCAAGTTGTTGCTCCGGCGGAAACGGCAGCGTCGTCGTTGGAAGTTCCGGCGAAGAAGCTGGCGCGGCAGCTCGATTTCACTGGCGCGCCGGAGCAGTCGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTCGTTGGAAGTTCCGGCGAAGAAGCTGGCGCGGCAGCTCGATTTCACTGGCGCGCCGGAGCAGTCGCAACCGCAGCAGCCGGTGGCTGTGCAGCCGTTGCCTCCGCAGCCGCCTCATGTGAGGATTGGGAAACCAGAATCTCCAAAATCAAGATCAAGACCTAACTTTGAAATGAAAGATGCTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAGCTGTATTGTGAATGTTTTGCATCAGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTCAATAATGTTGAAAATGAAGCTTCTAGACGAGAAGCTGTTGAAGCTACCTTAGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCAAGCAGCCCTCATGGAACACATGATAGCAGGGAAGAGACTGGGGAAGTTTTAATATTAGGAAAACATAACAAGGGGTGTCATTGTAAGAAATCTGGGTGCCTCAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAGGCTCTGTTTCATGGAGATCAAAATAACATGGCATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGTTATTTATCGCCACCAGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTACAACCAAGGATCCATCCGTTAGCAAGTTGGGACAACAGGTAAATAATGTCAGAGGTCCAGCACCTTCCTCCTCTTTGTCACCTGTCCCAGGTGCTCGTGTTGGAACTGCAACATTAGGTCCTTCAAAATTTATGTACAGATCTCTTTTAGCAGACATTATACAACCACAGCACCTCAAGGAGCTATGCTCAGTTTTGGTTCTAGTATCAGGACAAGCTGCAAAGACACTTACAGACCAGAAAAATTTATTGGAAAAGCATGCAGAAGATCAGACGGAAACTTCCCTTGCTTCTTCAAGTCAAGAGCAATTACCAAATCAAAAGCAAGGTCATGTTGAGAAGACTGTAGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAGTCAGCCCCGATAATTCCAGTTCAGACAATTCCAGTTCAGACGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCCGGGACTTTAGCCTTGATGTGCGATGAGCAAGATACAATGTTCATGACAACTGCCTCCCCCATTGGGCCAATGGCCCATCGCAATACATCTTCACAATTTCCTTATGGACAAGGAATGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACAAAGTTTAGAGATTTTCTCAATAGGGTTATCACTATGGGAGAAATAAACGGCAAGTTAATATTTTCCTCCGTCGAAACAAAGTGTTCTTCATTTGCTAGAAATGAACTAGAGAGCCAAAAGGACCCAATCATCAAATGCATTGGAAGTGCCAGTTCTGAGATAGTGCGTCAGCAGGGAGTCACTAGCAACGGTGTTAGTGTTACTAAATCTGTTGTTTCACCCGCGGCTACAACTTCGGCATCTTTAATCCCTGGTAATATTGCTGAAAATGGGGAGACTAAGGTTAAGATCGAAAAAGAGATATGA 1845 0.432 MRRCRCRKLLLRRKRQRRRWKFRRRSWRGSSISLARRSSRNXXXXXXXXXXXXXXXXXXXXXXXSSLEVPAKKLARQLDFTGAPEQSQPQQPVAVQPLPPQPPHVRIGKPESPKSRSRPNFEMKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEASRREAVEATLERNPNAFRPKIASSPHGTHDSREETGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMAYIQQAANAAITGAIGSSGYLSPPVSKKRKGQELFFWPTTKDPSVSKLGQQVNNVRGPAPSSSLSPVPGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKNLLEKHAEDQTETSLASSSQEQLPNQKQGHVEKTVADDCSSANQTDKVSPDNSSSDNSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTTASPIGPMAHRNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINGKLIFSSVETKCSSFARNELESQKDPIIKCIGSASSEIVRQQGVTSNGVSVTKSVVSPAATTSASLIPGNIAENGETKVKIEKEI 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00140 614 MobiDBLite consensus disorder prediction 320 340 - -
Cca08g00140 614 MobiDBLite consensus disorder prediction 93 107 - -
Cca08g00140 614 MobiDBLite consensus disorder prediction 425 450 - -
Cca08g00140 614 MobiDBLite consensus disorder prediction 400 417 - -
Cca08g00140 614 PANTHER TESMIN/TSO1-RELATED 95 590 IPR028307 -
Cca08g00140 614 MobiDBLite consensus disorder prediction 77 124 - -
Cca08g00140 614 MobiDBLite consensus disorder prediction 109 124 - -
Cca08g00140 614 SMART CXC_2 129 169 IPR033467 -
Cca08g00140 614 SMART CXC_2 214 255 IPR033467 -
Cca08g00140 614 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 217 251 IPR005172 -
Cca08g00140 614 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 131 166 IPR005172 -
Cca08g00140 614 Coils Coil 381 401 - -
Cca08g00140 614 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 95 590 - -
Cca08g00140 614 MobiDBLite consensus disorder prediction 392 470 - -
Cca08g00140 614 ProSiteProfiles CRC domain profile. 130 254 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00140 Cca-Chr8 1946688 1956429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00140 70 581 CPP Transcription Factor Family AT4G29000 54.707 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Cca08g00140 TCR 3.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00140 - - ccaj:109801631 929.472