Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00129 ATGTCCACAACACCCAAGCCTTATGCCATCCACACGCGCTCCGAGATAACCACCAAGTACCAGGTTCTCCACCACCTCGGCTccggcgcctacgccgacgtatacggcgcccgccgcctctccgacggcgccgcGGTGGCGCTGAAGGAGGTGCACGACTCGCAGTCCGCGTCGCGCGAGATCGAGGCCCTGCGCCTTCTCAAGGGCTCACCAAACGTCGTCGTCATGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCCGTTCTCGTCCTCGACTTTCTCCCCACGGACCTCGCCGCGCTCCTCCGAGAAACCGCCGCCGCCGCCGGAGAGGTGAAAAGCTGGATGATGCAGATTCTTGCTGCGGTGGACGCGTGCCACCGGAACTTGATCGTGCATAGGGACTTGAAGCCTTCCAATTTTTTGGTTTCCGATGATGGGGTGCTCAAGTTAGCGGATTTTGGACAGGCAAGAATAATTATGGAGTCTGGATTTGATGATGCTTCCCTGGAGAACCCACCGCCATATGAAGATGATGATTCATATAGTGAAAGCTCACTCCAAAATCCCGAAGTCATTTCCCAATTAGAGAACATAAACCAAACTGGATATGTAAATCGGGATCAGGATCAGGATCATGAAGAGTATTTCAGAGTTTTGGACGAGATGAAAACCAAGATTTGCTCGTATGACACTGATAAAGATACAAACATCATGGATGGAAACACCTCGTGTCTTGCAACGTGCACAACGAGCGACATAGATGATGATCTCTGCAAGGGTTCTTTTACCTACGAGGCTGAGGAGGTGGTAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACTAGGTTGTTCCGGGCTCCTGAGCTACTGTTTGGATCCACAAACTATGGTTTGGAGGTTGATCTTTGGTCATTGGGGTGTGTCTTTGCTGAGATCTTGACCTTGAAGCCATTGTTTCCTGGGACAAGTGATATAGACCAGATCAGCAGAATTATGAGTGTTTTGGGGAACATCAATGAGGAGGCTTGGCCTGGTTGTTCCAAACTTCCTGATTATGGAACAATCTCAATCTCATTTGGTAAGGTGGAGAACCCTACTGGCGTTGAAGCATGCATGCCTAATTGCACCCCTGATGAGGTCTCCCTGGTGCGAAGACTTGTTTGTTATAATCCAACAAAGAGAGCCACAGCATTGGAGTTACTTCAGGACAAGTACTTTAGTGAAGAGCCTCTTCCTGTTCCAGTTTCTGAGTTGCGGCTTCCTTTTACTAGGAATGGACAAGACCAGGATTCTTCCGGTGGGCACAATGAAATGGGTTCTGATTCTGGTTTGGAAAAGTTTGGCACTATGAATATCAACACATCTGGTTCTGATTTATCTAATACCCTTCCCTTGAACTAG 1410 0.4688 MSTTPKPYAIHTRSEITTKYQVLHHLGSGAYADVYGARRLSDGAAVALKEVHDSQSASREIEALRLLKGSPNVVVMHEFFWREDEDAVLVLDFLPTDLAALLRETAAAAGEVKSWMMQILAAVDACHRNLIVHRDLKPSNFLVSDDGVLKLADFGQARIIMESGFDDASLENPPPYEDDDSYSESSLQNPEVISQLENINQTGYVNRDQDQDHEEYFRVLDEMKTKICSYDTDKDTNIMDGNTSCLATCTTSDIDDDLCKGSFTYEAEEVVGNELGCLTSCVGTRLFRAPELLFGSTNYGLEVDLWSLGCVFAEILTLKPLFPGTSDIDQISRIMSVLGNINEEAWPGCSKLPDYGTISISFGKVENPTGVEACMPNCTPDEVSLVRRLVCYNPTKRATALELLQDKYFSEEPLPVPVSELRLPFTRNGQDQDSSGGHNEMGSDSGLEKFGTMNINTSGSDLSNTLPLN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00129 469 PANTHER CYCLIN-DEPENDENT KINASE 10 13 428 - -
Cca08g00129 469 MobiDBLite consensus disorder prediction 422 469 - -
Cca08g00129 469 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Cca08g00129 469 PANTHER CELL DIVISION PROTEIN KINASE 13 428 - -
Cca08g00129 469 Pfam Protein kinase domain 20 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00129 469 Pfam Protein kinase domain 278 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00129 469 SUPERFAMILY Protein kinase-like (PK-like) 7 425 IPR011009 -
Cca08g00129 469 SMART serkin_6 20 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00129 469 MobiDBLite consensus disorder prediction 449 469 - -
Cca08g00129 469 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Cca08g00129 469 Gene3D Transferase(Phosphotransferase) domain 1 107 422 - -
Cca08g00129 469 MobiDBLite consensus disorder prediction 425 441 - -
Cca08g00129 469 MobiDBLite consensus disorder prediction 166 187 - -
Cca08g00129 469 ProSiteProfiles Protein kinase domain profile. 20 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00129 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00129 Cca-Chr8 1830618 1833194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00129 8 467 Core Cell Cycle Gene Families AT4G28980 58.737 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Cca08g00129 Pkinase 6.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00129 - - gmx:548056 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02658 09 52192450 52194446 Cca08g00129 08 1830618 1833194 PCT