Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00122 ATGAATAGAGGTGTTCTTCAGAGCTCACCAGTGCAACAAATGATGACTGGAAACCCTAACTTGTGGAACATCAATATCAATAACATGCCTCCACAAGCTCCTCCTTTCTTGTCCACTCCTTCCAACTTTCCTATCCCTTATGCCCCCACTTCTTCTTCTTTTCCCTTTCCTTGGCATGAGAATCAAGAACTTCCTGAGTCATGGAGCCAACTACTCATGAGTGGTATGGTGGATGCAGAAGATAAGGCTGTGATGGGCCAGTTTCATACTAAGAAGTTGGAGAACTGGGAGGATCAAATGCTAATAAGTCAGGCTTCAAATGCTTCTCTTATTGAAGTGAAACAAGAAGACTCGGTTAACAGCTATGTATATGGCCATCGAAACGAGGAACTTCAGTCATCAACGCCATCTTGGTCTCCAAAATCCTGTGTGACAAGTTACAGTAGCAACATGTTGGATTTCTCTAACAATAAGACAGATGCAAGACATCCACCACCAGATCGATCTTATGAGTGCAACAGCAGCGGAGCTGGTGGGGCTCTCAAGAAAGCTAGGGTTCAACCCTCTGCTACAACACAGTCTACATTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACGGCCTCTGTCTTGTTTGAAGCTATTGCGTATATCGGATTCCTTCATAGTCAAATTGAGGTCCTTAGCTCACCATACTTGAGGGGTGGATCAGGAAACACGGGGCAACAACAACATTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAAAACTGCTTGAAGAGAAAAGCAGCTGGAGAACCGGATACTCAAGAAGAACCAGAGAATAGCTTGAGGAGTAGAGGGTTGTGTCTGGTGCCAGTGTCATGCACACTGCAAGTGGGGCGTGAAAATGGAGCAGACTATTGGGCTCCTCCCCTAGGAGGTGGCTTTCGTTAG 1008 0.4583 MNRGVLQSSPVQQMMTGNPNLWNININNMPPQAPPFLSTPSNFPIPYAPTSSSFPFPWHENQELPESWSQLLMSGMVDAEDKAVMGQFHTKKLENWEDQMLISQASNASLIEVKQEDSVNSYVYGHRNEELQSSTPSWSPKSCVTSYSSNMLDFSNNKTDARHPPPDRSYECNSSGAGGALKKARVQPSATTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLFEAIAYIGFLHSQIEVLSSPYLRGGSGNTGQQQHSVQGEKNCIFPEDPGQLLNENCLKRKAAGEPDTQEEPENSLRSRGLCLVPVSCTLQVGRENGADYWAPPLGGGFR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00122 335 MobiDBLite consensus disorder prediction 154 179 - -
Cca08g00122 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Cca08g00122 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 321 - -
Cca08g00122 335 PANTHER OS05G0228400 PROTEIN 15 321 - -
Cca08g00122 335 CDD bHLH_AtbHLH_like 195 244 IPR045239 -
Cca08g00122 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 248 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00122 Cca-Chr8 1775557 1779272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00122 1 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 42.776 1.09e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00122 - - gmx:100786555 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00122 08 1775557 1779272 Cca08g00122 08 1775557 1779272 ECH
Cca09g02655 09 52155944 52159574 Cca08g00122 08 1775557 1779272 PCT