Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00121 ATGTCTGTGCCATTGGAGCAAGATTATGTAGGCTTATCAGAGGTTCCTGCAATGAAAGATTGTGACAAGTTTTCTAAGAGGACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGCTTGCCAGGTTCTGAGTCACCAGAGAGAGATGAGGGTTTGGAAGACAAAAATTTGCACCCTTTAGGCATGGTCAAGAGTTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTCCTGGGAAGTGGCTTCTCTCTGGGAGTGGTGGATCTGAGGTGGGGTTGGGTAAAGATACTGTCTTGTTCTCTCCAAGGGGTGCTGGAACTGGTGTTAGTGCTGCCAAGGCTGAGTGTTCCAACCAACAAACTTCTGTTGTGAAAGATAAAGTTCCTCAGTCTCCAAAGCCATTGAATGAGAAGAAGCCTCAGATATCTGCTCCTGCTGCAAGGGAGCAAGTTGTGGGATGGCCGCCAATCCGTTCTTTCAGGAAGAACTCAATGGCCACTCAGCCACAAAAGAATGATGATGATGCAGAAGCCAAGTCTGGATGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGACCTCAAAAACTTTTGCAATTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGTTCTCATGGAGTTTGTGGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAAATGTTCACTAACTCTTGCAAGAGGTTGAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGTAAGAGCCGCAACTAG 930 0.457 MSVPLEQDYVGLSEVPAMKDCDKFSKRTSGGLNLKATELRLGLPGSESPERDEGLEDKNLHPLGMVKSLVSGAKRGFSDTIDGGPGKWLLSGSGGSEVGLGKDTVLFSPRGAGTGVSAAKAECSNQQTSVVKDKVPQSPKPLNEKKPQISAPAAREQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFCNYMELSSALEKMFSCFTISQCGSHGVCGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTNSCKRLRIMKSSEAIGLAPRAMEKCKSRN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00121 309 ProSiteProfiles PB1 domain profile. 189 291 IPR000270 GO:0005515
Cca08g00121 309 SUPERFAMILY CAD & PB1 domains 186 290 - -
Cca08g00121 309 Gene3D - 183 302 - -
Cca08g00121 309 Pfam AUX/IAA family 37 300 IPR033389 -
Cca08g00121 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 301 IPR003311 GO:0005634|GO:0006355
Cca08g00121 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 16 301 - -
Cca08g00121 309 MobiDBLite consensus disorder prediction 127 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00121 Cca-Chr8 1735611 1739332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00121 192 299 B3 DNA Binding Superfamily AT4G23980 31.481 3.90e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca08g00121 AUX_IAA 2.9e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00121 K14484 - gmx:100803754 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00121 08 1735611 1739332 Cca08g00121 08 1735611 1739332 ECH
Cca09g02653 09 52106441 52109466 Cca08g00121 08 1735611 1739332 PCT