Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00112 ATGGAGCGCATCATCGGCACCAAGTACAAGCTAGGTCGCAAGATCGGAAGCGGATCCTTCGGTGAAATTTATCTCGCGACGCATATGGATACCTTTGAGATCGTCGCCGTCAAGATTGAGAACGGTAAAACGAAGCACCCGCAATTGCTTTACGAGGCCAAGCTCTACAATATTCTACAAGGAGGAAGTGGCATCCCGAGCATAAAATGGTGTGGTGTAGACGGGGAGGAAAATGTGCTTGTTATGGATTTGCTGGGACCTAGTCTTGAGGATCTCTTTGTCTATTGTGGAAGAAAGTTCTCCCTCAAAACCGTGTTGATGTTGGCCGATCAAAtgATGAGTAGGATAGAATATGTGCATTCTAAAGGATTTCTACACAGGGATATAAAACCTGACAACTTCCTCATGGGGCTTGGTCGGAAGGCAAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCACAACTAATCGCCACATTCCTTACAGAGAGAACAAAAACTTAACAGGGACTGCACGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGGTATGTGCTTCTCTATTTCCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCAGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAGTCTCATCCTGTAGAGTTTGCTTCATACTTTCATTACTGTCATTCTCTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCTTATTTCGGGACCTATTTGCTCGAGAAGGTTATGACTTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTTCAGCCTTGCATATCAACGGCCCCCGGAGCAAGCAACAGTCCTGCAATACCAATGGATGTGGACAACCATCAGGGGGATATCTCAGCAGAACGCACTAAATCAGGCAATGTTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCCGTTGGTAAAAATTTGGGTTCTGAAAAGCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATACCCTCTACCTCATACTCTTTTGCTGACAACTTAAAAAGGAATTCCTTGAAGCCTGCCTTGTCCACTGAAGCCCCTGGACATGGGCAGGGAAGTAATAAAATTGGCCCTTCAAGTAGCTGGATTTCATCTCTGCAGCGCATGTCTTCTGCCAAATGA 1275 0.4322 MERIIGTKYKLGRKIGSGSFGEIYLATHMDTFEIVAVKIENGKTKHPQLLYEAKLYNILQGGSGIPSIKWCGVDGEENVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMSRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYDFDYVFDWTILKYQQAQKNRVQPCISTAPGASNSPAIPMDVDNHQGDISAERTKSGNVTGSGVKIQFKSPVGKNLGSEKPLDKNIFGEANIPSTSYSFADNLKRNSLKPALSTEAPGHGQGSNKIGPSSSWISSLQRMSSAK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00112 424 MobiDBLite consensus disorder prediction 398 424 - -
Cca08g00112 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00112 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00112 424 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 404 - -
Cca08g00112 424 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Cca08g00112 424 PANTHER CASEIN KINASE-RELATED 1 404 - -
Cca08g00112 424 MobiDBLite consensus disorder prediction 309 345 - -
Cca08g00112 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00112 424 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Cca08g00112 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca08g00112 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca08g00112 424 CDD STKc_CK1_delta_epsilon 8 282 - -
Cca08g00112 424 MobiDBLite consensus disorder prediction 391 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00112 Cca-Chr8 1553778 1559143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00112 1 213 EF-hand Containing Proteins AT4G23650 30.137 4.80e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Cca08g00112 Pkinase 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00112 K08960 - gmx:100805890 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00112 08 1553778 1559143 Cca08g00112 08 1553778 1559143 ECH
Cca09g02648 09 52066035 52070503 Cca08g00112 08 1553778 1559143 PCT