Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00110 ATGGCTTCTTCAATTCGTCCATCACTCTCTTCCATCAAGTTACCCTCCCTCTCCTCTTGCAACCCTTCTCAAAAGATCTCTCTTTTTTATCTCGGCACCGGAGTTAGACAGTTTCGTAATTTTGGCCTGATAGCTTCTAGGTTTCTGAGACGTGATGAAAACTGCATGGGAGTGATGGCATCAGGGAGCATGTCCCCAGCTGCTACACAGGAAAATGTACTAGATTGGGTCAAACATGACAAGAGAAGAATGCTTCATGTTGTGTATCGTGTTGGTGACCTAGACAAGACCATAAAATTTTATAAAGAGTGTCTAGGAATGAAGTTGCTCAGACAACGTGATATGCAAGAACAGAGATATACCAATGCCTTTCTTGGATATGGGCCTGAGGATGCACACTTTGTTATTGAACTTACATACAATTATGGGATTGACAAGTATGACATTGGAGATGGATTTGGCCATTTTGGTCTTGCTGTTGATGATATTTCAAGAATAGTGGAACTTGTTAGAGCTAAGGGTGGGAAAATTACTAGAGAGCCTAGTCTTGTCAAGGGAGGCAACTCAATAGTTGCATTTATCGAAGATCCTGATGGTTATCAATTTGAACTTTTGGAAAGGACTCCCTCTCCGGAGCCTTTGTGCAAAGTAATGCTTCGAGTGGGCAATCTTGATCGTTCCATTAAATTTTATGAGAAGGCTTTTGGTATGGAGCTACTTCGAACACAAGATGATCCAGAATCCAAGAATACAATAGCAATACTGGGTTATGGTCCAGAGGAAAAAAATGCTGTACTGGAGTTGACTTACAACTATGGAGTCACACACTATGAAAAAGGAGATGCTTATGCTCAGATTGCAATAGGCACAAATGATGTGTACAAAACTGCAGAAGCAATTAAACTTGCAGGAGGGAGGGTTACTAGGGAACCTGGACCAGCACCTGGTGTAAGGACAAAGATCACATCATGTGTGGATCCTGATGGATGGAAAACTGTTTTTGCAGATAATGTTGATTTTCGTAGGGAGTTGGAGTAG 1038 0.4162 MASSIRPSLSSIKLPSLSSCNPSQKISLFYLGTGVRQFRNFGLIASRFLRRDENCMGVMASGSMSPAATQENVLDWVKHDKRRMLHVVYRVGDLDKTIKFYKECLGMKLLRQRDMQEQRYTNAFLGYGPEDAHFVIELTYNYGIDKYDIGDGFGHFGLAVDDISRIVELVRAKGGKITREPSLVKGGNSIVAFIEDPDGYQFELLERTPSPEPLCKVMLRVGNLDRSIKFYEKAFGMELLRTQDDPESKNTIAILGYGPEEKNAVLELTYNYGVTHYEKGDAYAQIAIGTNDVYKTAEAIKLAGGRVTREPGPAPGVRTKITSCVDPDGWKTVFADNVDFRRELE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00110 345 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 213 337 IPR037523 -
Cca08g00110 345 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 345 - -
Cca08g00110 345 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 83 209 IPR029068 -
Cca08g00110 345 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 215 335 IPR029068 -
Cca08g00110 345 ProSitePatterns Glyoxalase I signature 1. 86 107 IPR018146 GO:0004462|GO:0046872
Cca08g00110 345 PANTHER LACTOYLGLUTATHIONE LYASE 11 345 - -
Cca08g00110 345 Gene3D - 55 209 IPR029068 -
Cca08g00110 345 TIGRFAM glyox_I: lactoylglutathione lyase 71 215 IPR004361 GO:0004462|GO:0046872
Cca08g00110 345 TIGRFAM glyox_I: lactoylglutathione lyase 214 337 IPR004361 GO:0004462|GO:0046872
Cca08g00110 345 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 83 207 IPR037523 -
Cca08g00110 345 CDD GlxI_Ni 84 205 - -
Cca08g00110 345 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 217 331 IPR004360 -
Cca08g00110 345 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 84 204 IPR004360 -
Cca08g00110 345 Gene3D - 210 345 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00110 Cca-Chr8 1543314 1547363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00110 216 334 Calmodulin-binding Proteins AT1G08110 26.207 2.30e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00110 08 1543314 1547363 Cca08g00110 08 1543314 1547363 ECH
Cca09g02644 09 52042348 52047793 Cca08g00110 08 1543314 1547363 PCT