Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00108 ATGAATCAACTTGGTGTCACCCTTTTGATTCTCTTAGCCTTGTTCCTCCATGTTACAGCACAGACTGGCACAGCACCTTCAGGAGATGCTGTCTCCAATTTCCAACCAAGCCTTGCTGTTGTCATAGGAATCCTTGGTGTCATGTTTCTACTTACATTCTTTCTTCTCATGTATGCAAAATTCTGTCAACGCCGCGCTTCAGCTCCTGTTAGGGACACAGAAAACCAAGCAAGTTTTGTGAGATCAAGGTCTAGATTCTCAGGAATTGACAAGACTGTGATAGAATCACTGCCCTTCTTCAGATTCTCTTCACTCAAAGGGTCAAAGGAAGGGCTTGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTTGAAGTTCTGAGACTTCTACCAAAGTGCAAACATGCTTTTCATATTGGTTGCATAGACCACTGGCTTGAAAAGCACTCTAGCTGTCCTATTTGCAGGCACAGGCTTAACCCTGAGGACCACACAACCTTCACATATTCAAGCAGTTTAAGGGGGCTAGCAAACCAATCAGATTTAGGTGAAGAGTCCAACATAGAGATCTTTGTACAAAGACAGGAAGAGCATCATGGTTCATCAAGATTCAGTGTTGGAAGCAGCTTTAGGAAAATGGGAAAGGATGTCAAGGAAGAAGAGTTTCTCATCCAAAAAGGAGCAGAAGATAGTGATGGTAACCAGAAGGGGTATCATAAACACAACCACAGGATCACTATATCTGATGTTGTGTTAAAGCACAGGTGGAGCAACGTCAGTTCTTCAGATCTTGTGTTTTTGAATTCGGAGATGCTGAATGCTACATCAAGCAACAGATTCAACAACTTGGAATCAAATGCTGAAATGATGTCAACTCCAAGAGGAGTGGTGGAAAATGAGCAGATTATGAACATCAAGGAGGAGATGGAGAGGAAGATTTCCTTTGAGAGCAAAGTTAGTGCACTGAACAACATAAAATCAGTTTCAGGTAATTCTGTAGGAAAATCAAGTCATGCACCAAAGTATGTGAACACGGGTGAGAAAAGCCTTAAAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATTGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGTCTCAGCAACAATCTCAAAATAAACAACAACCATTAGATGTATGA 1173 0.4152 MNQLGVTLLILLALFLHVTAQTGTAPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQRRASAPVRDTENQASFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRHRLNPEDHTTFTYSSSLRGLANQSDLGEESNIEIFVQRQEEHHGSSRFSVGSSFRKMGKDVKEEEFLIQKGAEDSDGNQKGYHKHNHRITISDVVLKHRWSNVSSSDLVFLNSEMLNATSSNRFNNLESNAEMMSTPRGVVENEQIMNIKEEMERKISFESKVSALNNIKSVSGNSVGKSSHAPKYVNTGEKSLKEERMRQIWFPIARRTAQWFVNRERRSQQQSQNKQQPLDV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00108 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 382 - -
Cca08g00108 390 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Cca08g00108 390 SMART ring_2 114 155 IPR001841 -
Cca08g00108 390 Pfam Ring finger domain 113 156 IPR001841 -
Cca08g00108 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 382 - -
Cca08g00108 390 CDD RING-H2_PA-TM-RING 113 156 - -
Cca08g00108 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
Cca08g00108 390 SUPERFAMILY RING/U-box 93 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00108 Cca-Chr8 1530180 1531442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00108 15 378 C3H Transcription Factor Family AT4G28890 46.793 7.67e-108 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00108 K10664 - gmx:100803207 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00108 08 1530180 1531442 Cca08g00108 08 1530180 1531442 ECH