Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00107 ATGGGTTGCATTTACTCGCGAGTCTGCATAGGCGACAATTGCAGAGGCTCCAGCATCAACGGTGACCCAATCGTCAGAGCCGACATCGCCGAAGTCGCCAATTTCTCGCCAACTTCTTCCGATGTCGAAGAAGCCGAAATCAGAGACCAATTGAACCAATTGAGCATCACTAGAGACTCCGAAGCCGGAATCCGAAGACTCGCTAGGGTTTCCGCGCAGTTTCTTCCGCCGGACGGTTCACGAATCGTCAAGGTTCCTTCTGGAAACTTCGAACTGCGCTATTCGTTTCTCTCGCAGCGTGGTTACTACCCCGATGCACTCGACAAAGCTAACCAAGATAGTTTCTGCATCCACACTCCTTTCGGTACGAACCCTAACGACCATTTCTTCGGCGTGTTCGACGGCCACGGGGAGTTCGGAGCTCAGTGTTCGCAGTTCGTGAAGCGGAAGCTCTGCGAGAATTTGCTCAGGAACTCGAAGTTCCGCGCGGACCCTGTCGAGGCTTGCCACGCGGCGTTCCTGGCGACGAATTCGCAGCTTCACGGCGATGTTTTGGATGATAGCATGAGCGGGACGACGGCGGTGACGGTGCTGGTGCGGGGGAGGACGGTGTACGTGGCGAATTCCGGTGATTCGAGGGCGGTGATTGCCGAGAGGAGGGGGAAGGAGGTTGTGGCGGTTGATTTGTCGATTGATCAGACGCCTTTTAGGGCGGATGAGCTTGAGAGGGTGAAGCTTTGCGGGGCGAGGGTGCTTACTTTGGATCAGATTGAGGGGTTGAAGAACCCTGATGTTCAGTGTTGGGGCACTGAGGAGGGTGATGATGGTGACCCTCCTAGGTTGTGGGTGCCCAACGGGATGTACCCAGGGACTGCTTTTACCAGGAGTATTGGTGATTCTATTGCGGAGACTATTGGAGTTGTGGCTAACCCTGAGATTGTGGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTGGCCAGTGATGGGGTGTTTGAGTTTCTCTCTAGCCAGACTGTGGTTGAGATGGTTGCAAAATTTAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCAGAATCTTATCGGCTCTGGCTACAGTATGAAACTCGTACAGACGACATTACAGTCATCATTGTGCATATAAATGGGCTAACTGAACCTGCTGTTGGTCAGTCAGCATGTTATGGTGATGTTTTGCGAACCCCTGTGCCTCAAGTTGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAATGCTAGGAACCATCGTGTAAGGCATGATTTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCTTAGAGAATGGGCAAGCTTGGGTTCCTCCATCTTCAGCCCATAGGAAGACATGGGAAGAAGAAGCACACATAGAGCAGGCGTTGCATGATCATTTTCTCTTCCGAAAACTAACTGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTGGAGGTCCAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAGGTCTTGACGACTCAGGAAGAAAAAGATGGGGAGGTGCCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTCTCATGCTTTGGAGAACTTGCTCTAATGTATAATAAACCACTCCAAGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAACGAGAAGATTTTCGAGGGATTTTAATGTCAGAGTTCTCTAACTTATCATCCTTGAAGTTGCTTCGGTCTGTAGATCTCCTCTCAAGGTTGTCAATTTTACAACTCAGTCAGATTTCTGACTCCCTTTCTGAAGTATCCTTCTCGAATGGCCAGACAATAATAGACAAAAATGAAGTTCTTGCATTGTACATTATTCAGAAGGGACAAGTGAAAATCACTTTTGATTCTGATTTATTGATAAGTCCAAATGCCTACAGCCTCAAGCCTGACATCCAAAATGAGGATGATGTAGAGAGCAGAAGAGAGCTGTCAATAGAGAAGTCTGAGGGGAGTTATTTTGGTGAATGGGCCCTTCTTGGTGAACATATTGGTTCCTTAAGTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCTGTTATTGGCTCCTTACAAAAGATTTCTCTGGAAGATCACAAATCAAGGGATAATTCCATGGAGTTGACTAGAAATCATGATTTATCATCCCTTGATAAAGTCCACCTCTCAGATTTGGAGTGGAGAAAGACACTATATTCCACTGACTGCTCTGAGATAGGGCTTGCAAATTTAAGAGATTCAGAAAATTTACTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAAGGCTAGGAAAGGAATCACAAGTCCTGAAAGAGAAAGATTTGATTAAGGGTATGGGCTCTTCAGCTTGTATACCACAGGTTTTATGCACTTGTGCTGACCGCATGTATGCTGGAATACTGCTAAATACACGCCTTGCCTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTAGTGAATCAGCAGCGCAGTATTGTGCTGCTTGTGTTGTTGCTGCCTTAGAAGCCTTGCACAAGAATGGTGTTCTCTATAGAGGTGTGTCACCTGATTTTTTGATGTTGGAGCAAACAGGACAGATACAGGTTCCTGAACTTTTGTTTTATTGCTTTTCATATCCATGTTTATCAGCACTATTAAAGGTGAATCTACCATGTAGTTATGGCAGATGA 2784 0.4644 MGCIYSRVCIGDNCRGSSINGDPIVRADIAEVANFSPTSSDVEEAEIRDQLNQLSITRDSEAGIRRLARVSAQFLPPDGSRIVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTNPNDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNSKFRADPVEACHAAFLATNSQLHGDVLDDSMSGTTAVTVLVRGRTVYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRADELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLTEPAVGQSACYGDVLRTPVPQVVEVTGSESPSTFGWNARNHRVRHDLSRARLRALENSLENGQAWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVQPGDIIVKQGGEGDCFYVVGSGEFEVLTTQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDKNEVLALYIIQKGQVKITFDSDLLISPNAYSLKPDIQNEDDVESRRELSIEKSEGSYFGEWALLGEHIGSLSAVAVGDVVCALLTKDKFESVIGSLQKISLEDHKSRDNSMELTRNHDLSSLDKVHLSDLEWRKTLYSTDCSEIGLANLRDSENLLTLKRFSKPKVKRLGKESQVLKEKDLIKGMGSSACIPQVLCTCADRMYAGILLNTRLACPLSSILSSPFSESAAQYCAACVVAALEALHKNGVLYRGVSPDFLMLEQTGQIQVPELLFYCFSYPCLSALLKVNLPCSYGR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00107 927 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 38 901 - -
Cca08g00107 927 Gene3D Transferase(Phosphotransferase) domain 1 847 900 - -
Cca08g00107 927 Pfam Cyclic nucleotide-binding domain 496 587 IPR000595 -
Cca08g00107 927 Pfam Cyclic nucleotide-binding domain 622 725 IPR000595 -
Cca08g00107 927 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Cca08g00107 927 SUPERFAMILY cAMP-binding domain-like 443 587 IPR018490 -
Cca08g00107 927 SUPERFAMILY Protein kinase-like (PK-like) 766 900 IPR011009 -
Cca08g00107 927 Gene3D - 88 384 IPR036457 -
Cca08g00107 927 SUPERFAMILY PP2C-like 81 385 IPR036457 -
Cca08g00107 927 ProSiteProfiles cAMP/cGMP binding motif profile. 603 726 IPR000595 -
Cca08g00107 927 ProSiteProfiles PPM-type phosphatase domain profile. 93 383 IPR001932 -
Cca08g00107 927 SMART cnmp_10 603 740 IPR000595 -
Cca08g00107 927 SMART cnmp_10 477 600 IPR000595 -
Cca08g00107 927 CDD CAP_ED 603 726 IPR000595 -
Cca08g00107 927 CDD CAP_ED 477 586 IPR000595 -
Cca08g00107 927 ProSiteProfiles cAMP/cGMP binding motif profile. 477 586 IPR000595 -
Cca08g00107 927 PRINTS cAMP-dependent protein kinase signature 513 527 - -
Cca08g00107 927 PRINTS cAMP-dependent protein kinase signature 498 512 - -
Cca08g00107 927 PRINTS cAMP-dependent protein kinase signature 721 733 - -
Cca08g00107 927 PRINTS cAMP-dependent protein kinase signature 548 557 - -
Cca08g00107 927 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 38 901 - -
Cca08g00107 927 CDD PP2Cc 109 383 IPR001932 -
Cca08g00107 927 Gene3D Phosphorylase Kinase; domain 1 760 846 - -
Cca08g00107 927 SMART PP2C_4 89 381 IPR001932 -
Cca08g00107 927 Gene3D Jelly Rolls 594 744 IPR014710 -
Cca08g00107 927 Pfam Protein phosphatase 2C 120 362 IPR001932 -
Cca08g00107 927 Gene3D Jelly Rolls 450 593 IPR014710 -
Cca08g00107 927 SUPERFAMILY cAMP-binding domain-like 594 731 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00107 Cca-Chr8 1517634 1526378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00107 1 905 PP2C-type Phosphatase Gene Family AT2G20050 69.677 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00107 - - gmx:100799821 1658.66