Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00104 ATGGGTGTAAGTGTTGCAAGAAGGGCCAAACAAATTCAAACCCATCGTGGGAGAACATCACCATGTGCATATTGGCTGGCTGGGAGATGTAACAGAAATCCATGCAAGTTTTTGCACACATCTCAGCCGCATACTACTTATCATTATGCCAATACTCCTTACACATACACAAGGAACTCTCATTCCTCCTCCCACTCTAACTCAAAGAAGGAAGCTCTCACAAGAAATAATAGAGATGAGACAAGCATTGTCAAGCCTCCTCGCAAATCATCATTGCCAAGCATATGTAAATATTGGATAAATGGCAATTGCGTATATGGTCAAAAGTGTCGGAATTTGCATTCATGGTTTCACGGTGATCACCTTTCTTCTGTAGCAAAACTTCAACAACACAAGAAGGCTATCACTGGAATTGCACTTCCGGTTGGATCCGACAAACTTTACTCTGGCAGTACGGATGGGACAGTTCGGATATGGGACTGTCATACTGGTGGATGTAGTAATGTGGTAAACTTTGGCGTCAAAGTCACTTCTTTGATCAGCGAGGGACCATGGGTTTTTGTTGGTATACATAATGCTGTCAAGGCTTGGAATATTCAAACTTTATCAGAGTTTACTCTTGATGGACCTAAAGGACAAGTCCTTTCCATGATTGTTGGCAATGATACACTTTTTGCTGGAGCAGAGGATGGTGTCATTTATGCATGGAGAGGAAGTGCTGAAGCTAACTCCTCCTCTCCCTTTGAATTGGTTGCATCACTAACTGGTCACTCAAAAGCTGTGGTTTGCCTTACTGTTGGACGGAAGAGGCTGTACTCAGGTTCCATGGACCAAAGCATAAAGGCATGTGGTTGGGACATAGATACATTAGAGTGTGAAATGACACTCAATGGGCATACTGATGTAGTTACATCTCTTGTATGTTGGGACCATTATTTGTTGTCAAGTTCATTTGACTGCACAGTTAAGGTCTGGGCTGCTACTGAGGAGATAACATTGAAAGAGATATACACGCACACTGAGAAAAATGGTGTTGTTGCACTTTCCGGGATGACTGATGCAGAAGGAAATCATATATTGTTTTGCTCATGCAAAGACAATTCAGTTCGTTTGTATGATATGCCATCATTTTCAGAGAGAGGTCGTTTATTTACAAAGAAAGAGGTGACAACTTTTGAGTTAGGTCCTGATGGACTCTTTTTCACTGGAGACGGGACTGGTTTGCTGACTCTGTTGAAATGTCACGGTTTTAAGGTATCTCTATTTTCAGTGGCTTTCCCAGTTGAACTTTCTATTTCTGGAACTTCAGAAAAGGAGGGTGTGGGTGTGTTTAGATCCACAACAAACAATGTCACTTTTGCCTCTCATTCAAAGGAACATGCTTCTGAAAAAGAAGCTGATTTGGTCAATGACTTGGAATTTGATGGGGGCAGAAATTCAAAAAAGGGTCACATACTTAATAATAAGAGTTTAAAGGTGGAAAATCATGAGGATGCAGTTTACGGTTCCCCTCAGAAACGACCCAAGTATGCTGATTTGAGCACATCTGATATGTTACTAGCTGTAGAAAAGCCTTCAAATGTCAGTAGAATACAAAGTGTGGAAATGGAACCGCAAGTGTTGAAATCTCCTTTGTCCATGTTGAATAATAAACTTAAGATGGGTACTTCGTCGACCAAGAGTAGGTTGGTGTGGCCAGCTTCATTAACGCATATGAACTCTTTGTTGCTTCAGAGTTCTAATTCTGCTTATATGAGGGTAAGATGGTCCTCTCGACGCGACCGGGAACTCTTGTCTGCAAAACTGGAGATTGAAAATGCCCGTGTTATACCAAATTCTTCAGGACTTTATGCACCTATTTTCCGAGATGTTTCCAAGTTTTCAAGGAGTTATGAGCTGATGGAGCGCAAGCTCAAAGTTTTTATCTATAGAGAAGGGGCAAAACCTATATTTCATCAACCAAAGATGAGAGGAATTTATGCTTCAGAGGGGTGGTTTATGAAATTGATGGAGGGAAGTAAAAAGTTCATTGTGAGGGATCCTCAAAAAGCTCATTTGTTTTACCTACCATTCAGTTCACAAATGCTAAGAGTTGCCCTTTCTGACCGTAAGCTGATGGAGCAATACCTTGAGAAATATGTAGAGTTAATTGCAGGAAGATATCGTTTCTGGAACAGAACTGGGGGAGCAGACCATTTTCTTGTTGCTTGTCATGATTGGGCCTACCATATCACAAGGCAACCAATGAAAGATTGTATTAGGTCTCTTTGTAATTCTAATGTTGCTAAAGGCTTCCAAATAGGGAAGGACACTACTCTACCTGTTACATATATACACTCTATGATGGATCCTCTAAGAAGATTTGCAGGTAAACCTCCTTCAGAAAGATCTATTCTA 2397 0.4097 MGVSVARRAKQIQTHRGRTSPCAYWLAGRCNRNPCKFLHTSQPHTTYHYANTPYTYTRNSHSSSHSNSKKEALTRNNRDETSIVKPPRKSSLPSICKYWINGNCVYGQKCRNLHSWFHGDHLSSVAKLQQHKKAITGIALPVGSDKLYSGSTDGTVRIWDCHTGGCSNVVNFGVKVTSLISEGPWVFVGIHNAVKAWNIQTLSEFTLDGPKGQVLSMIVGNDTLFAGAEDGVIYAWRGSAEANSSSPFELVASLTGHSKAVVCLTVGRKRLYSGSMDQSIKACGWDIDTLECEMTLNGHTDVVTSLVCWDHYLLSSSFDCTVKVWAATEEITLKEIYTHTEKNGVVALSGMTDAEGNHILFCSCKDNSVRLYDMPSFSERGRLFTKKEVTTFELGPDGLFFTGDGTGLLTLLKCHGFKVSLFSVAFPVELSISGTSEKEGVGVFRSTTNNVTFASHSKEHASEKEADLVNDLEFDGGRNSKKGHILNNKSLKVENHEDAVYGSPQKRPKYADLSTSDMLLAVEKPSNVSRIQSVEMEPQVLKSPLSMLNNKLKMGTSSTKSRLVWPASLTHMNSLLLQSSNSAYMRVRWSSRRDRELLSAKLEIENARVIPNSSGLYAPIFRDVSKFSRSYELMERKLKVFIYREGAKPIFHQPKMRGIYASEGWFMKLMEGSKKFIVRDPQKAHLFYLPFSSQMLRVALSDRKLMEQYLEKYVELIAGRYRFWNRTGGADHFLVACHDWAYHITRQPMKDCIRSLCNSNVAKGFQIGKDTTLPVTYIHSMMDPLRRFAGKPPSERSIL 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00104 799 SUPERFAMILY WD40 repeat-like 101 409 IPR036322 GO:0005515
Cca08g00104 799 MobiDBLite consensus disorder prediction 58 90 - -
Cca08g00104 799 Gene3D - 182 421 IPR015943 GO:0005515
Cca08g00104 799 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 128 160 - -
Cca08g00104 799 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 10 411 - -
Cca08g00104 799 Gene3D - 116 181 IPR015943 GO:0005515
Cca08g00104 799 SMART WD40_4 121 160 IPR001680 GO:0005515
Cca08g00104 799 SMART WD40_4 289 326 IPR001680 GO:0005515
Cca08g00104 799 SMART WD40_4 332 373 IPR001680 GO:0005515
Cca08g00104 799 SMART WD40_4 247 284 IPR001680 GO:0005515
Cca08g00104 799 SMART WD40_4 376 413 IPR001680 GO:0005515
Cca08g00104 799 SMART WD40_4 200 237 IPR001680 GO:0005515
Cca08g00104 799 PANTHER - 10 411 IPR044715 -
Cca08g00104 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 128 160 IPR001680 GO:0005515
Cca08g00104 799 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Cca08g00104 799 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Cca08g00104 799 SMART c3hfinal6 16 41 IPR000571 GO:0046872
Cca08g00104 799 MobiDBLite consensus disorder prediction 71 85 - -
Cca08g00104 799 ProSiteProfiles Zinc finger C3H1-type profile. 16 42 IPR000571 GO:0046872
Cca08g00104 799 Pfam Exostosin family 635 799 IPR040911 -
Cca08g00104 799 Gene3D - 4 53 - -
Cca08g00104 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 325 IPR001680 GO:0005515
Cca08g00104 799 Pfam WD domain, G-beta repeat 125 160 IPR001680 GO:0005515
Cca08g00104 799 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00104 Cca-Chr8 1444084 1459036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00104 127 372 Acyl Lipid Metabolism Gene Families AT3G18860 25.556 5.24e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca08g00104 Exostosin 7.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00104 - - gmx:100805678 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00104 08 1444084 1459036 Cca08g00104 08 1444084 1459036 ECH
Cca09g02639 09 52006596 52010082 Cca08g00104 08 1444084 1459036 PCT