Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00103 ATGGTCGAGCCACCAAGCCCACAATCAGAAACATCAACAAACACAAACTCAACTTCGGCTTCTTCACCGTCCTCCTCGTCCTCGAATTCTAAGAAACGAGGACGAGATAGTaacaacgacaacaataacaataacaacaacaataaACACTCGGTGTATAGAGGTGTCCGAATGCGCACGTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGAAAGAAGAACCGAATCTGGCTGGGCACGTTCGCCACCGCCGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTGACCATCAAGGGCTCCTCCGCGATCCTCAACTTCCCGGAACTGGCGGCCTCGCTGCCGCGGCCGGCCTCGAACGCCCCCCGCGACGTGCAGGCAGCCGCCGCCAAGGCCGCCTCCATGGTGGCGGCCCCGCCGCGGACCCCTCCCTCGCCGGTGGCCACGCCGGAGGAGGAGCTCGGCGAGATCGTGGAGCTGCCGGCGCTGGGAACGAGTTTCGACTCGGCAGAGCCGAGTCCCGAGTTCGTTTTCGTGGAGCCGGACGACGCGTGGCCCTACTCTCAGCCATGGTATCACAGCATTTATGACGGTGGGTACTTCATCGGCGACATGAACATGGTTTCAATGCATGAGTCAGAAAATATGGTTCTTTCGTTGTGGCCTTAA 672 0.5833 MVEPPSPQSETSTNTNSTSASSPSSSSSNSKKRGRDSNNDNNNNNNNNKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNAPRDVQAAAAKAASMVAAPPRTPPSPVATPEEELGEIVELPALGTSFDSAEPSPEFVFVEPDDAWPYSQPWYHSIYDGGYFIGDMNMVSMHESENMVLSLWP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00103 223 SUPERFAMILY DNA-binding domain 51 110 IPR016177 GO:0003677
Cca08g00103 223 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Cca08g00103 223 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Cca08g00103 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 211 - -
Cca08g00103 223 CDD AP2 51 111 IPR001471 GO:0003700|GO:0006355
Cca08g00103 223 MobiDBLite consensus disorder prediction 39 53 - -
Cca08g00103 223 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Cca08g00103 223 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Cca08g00103 223 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Cca08g00103 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 211 - -
Cca08g00103 223 MobiDBLite consensus disorder prediction 1 32 - -
Cca08g00103 223 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Cca08g00103 223 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00103 Cca-Chr8 1420762 1421888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00103 13 198 AP2-EREBP Transcription Factor Family AT5G11590 51.923 1.35e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g00103 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00103 K09286 - gmx:100804801 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00103 08 1420762 1421888 Cca08g00103 08 1420762 1421888 ECH
Cca09g02637 09 51988054 51989743 Cca08g00103 08 1420762 1421888 PCT