LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g00083	ATGAAAATCAGAGAAAACACAAACACTCACATGACAATACCATTTTACCATTATCTAACCATCTTCTTAATCCTGAGCCATGCACGCTCTGAGACTCAGATGCACGAACAAGAACTTGCAGTCCTACTGAAGATAAAGCAGCACCTTCAGAATCCTTCATTCCTCAGTCACTGGACCCCTTCAAACACTTCTCACAGTCACTGTTTTTGGCCAGAGATCACATGCACCAGTGGCTCTGTCACTGGATTGGCTCTGGGCAACAGAAACATCTCTCAAACACTACCACCTTTCATGTGTGACCTCAAGAATCTGACACATGTTGATTTCAGAAACAATTCCATTCCGGGGAAGTTTCCAACATTTCTCTACAATTGTTCCAAGCTGGTGTACCTGGACCTCGAAATGAATGATATTCATGGTAGCATTCCTGATGACGTAGACAACTTGGTTAACTTGCTGCATCTTAACCTTGGTTCCACAAGCTTAAGTGGTGATATTCCTACTAGCATTGGAAGGTTAAAGCAACTGATATTTCTTCAACTTCAGTATTGTCTATTCAATGGAACCTTCCCTGCTGAGAATATCAGCAACTTGTTCAATCTTGAATTCTTGGATATGTCCTCTAACTTGGATCTCCCTCCTTCAAAGTTACCATCAAGCCTGACCAGGTTGAAAAAACTGAAGTTCTTTCACATGTACAGTTCCAACTTGTTTGGGGAAATCCCTGAAACCATTGGAGAAATGGTGGCCTTGGAGAACTTGGATATATCACGAAGCAATCTCACTGGACACATTCCTAAAGGCTTGTTCATGCTGAAGAATTTGAGCATTCTGTACCTTTTCAAGAACAGTCTCTCTGGGGAGATACCTGATGTGGTTGAAGCATTGAATTTGACCGAACTTGATCTTGCAGAGAACAATCTTGCAGGGAAAATACCTCATGATTTTGGGAAGCTCCAAAACTTAACATGGTTGAGTTTGTCTCTCAATAACTTGTCAGGGGAGATACCGCAAAGCATAGGCCGTCTTCCATCTCTTGAACATTTTCGTGTCATATTCAATAACTTGTCAGGTATTCTTCCTCCTGATTTTGGTCGCTACTCAAAGCTTAAATCATTTTTGGTTGCATCTAATAGTTTTAGTGGAAGTCTCCCAGAGAACTTATGCTATCAGGGTCAGTTACTTAATTTATCTGCTTATGAAAATTATCTGAGTGGAGAGTTGCCACAATCACTAGGCCAGTGTAGTAGCCTGGTGGATTTAAAAATTTATAGTAATGGGTTTTCTGGTAGCATTCCTAGTGGTCTTTGGACTTTCAGTTTGTCAACTTTCATGGTGAGCAATAATAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCCTCAAGTGTCTCACGCTTGGAGATTAGTCACAATCAGTTTTATGGTAGGATTCCAACTGGGGTATCTTCATGGACTAATGTGGTAGTGTTTGATGCCAGTAAGAACTACCTTAATGGGAGTTTTCCAAAAGAGTTAACAGGTCTTCCCAAGTTAACAACTCTATTGCTAGATCAGAACCAAATCACAGGACCACTTCCATCAGATATAATATCATGGAAGTCTCTAGTCACTCTAAATTTGAGCCACAACCAACTCTCTGGACCAATCCCAGATGCAATTGGTTTGTTACCTGTCCTTAGTCAACTTGACCTATCAGAAAACCAATTTTCAGGCCAAGTTCCTTCTGTACTTCCTAGACTCACCAATCTCAATCTATCCTCTAACCATTTGTCAGGGAGGGTTCCAAGTGAATTTGAAATTTCTGTGTATTCGACAAGCTTTTTAAACAATTCTGGCCTATGTGCTGATACCCCAACACTGAACCTTAGGCTGTGCAATGTTGCCTTTGCAAGGCCAACCAAAGGCTCTTCTTGGTCTCTTGCTTTGATTTTGTGCCTGGTGGCAGTAGCCGTGTTACTGGCTTTGTCAATACCACTCTTGATCATCAAACTTTACAGAAGAAGGAAACAAGGATTGGATAACTCATGGAAGCTCATTTCCTTTCAAAGTCTGAGTTTCACTGAATCAAACATTTTGTCATCATTGGTAGAACATAATGTTATTGGAAGTGGTGGATTTGGCACGGTATACCGCGTCCCCGTTGATGATTTAGGCTATGTTGCTGTTAAAAGGATCTCCAGTAACAGAAAGTTAGACCAAAAGTTAGAGAATTCATTTCGTGCAGAAGTTAAAATATTGAGCAACATTCGTCATAAAAACATTGTGAAATTGATGTGTTGTATCTCCAATGATGATTCTATGCTCCTTGTTTATGAGTATTTGGAAAACCGTAGCCTAGATAGGTGGCTGCACAATAAGAGCAAGTCATCATCTGTGTCGGGTTCAGTCCATAATTTTGTGCTTGATTGGCCAAAGAGATTGcaaatagccattggggttgctcatggcttgtgctacatgcaccatgattgttcaccacctattgtccatcgagatgtgaaaacaagcaacattcttttggatgctcaattcaatgcaaaaattgctgattttggtctggctaggatgttaatgaaaCCAGGGGAACTTGCTACCATGTCATCAGTTATTGGCTCATTTGGCTACATGGCTCCAGAATATGTTCAAACAACACGAGTGAGTGAGAAGATTGATGTATTCAGCTTTGGGGTTGTACTATTGGAGCTGACAACTGGTAAAGAGGCTAATTATGGTGATGAGCACTCATCTCTTGCTGAGTGGGCATGGCGCCACATAATTGTTGGAAGCGAAATAGAAGAGCTGCTAGACTATGAGTTCATGGATCCAAGTTACAAGAATGAAATGTGCTGTGTTTTCAAACTTGGGGTCTTGTGCACTTCAACACTTCCTACTAATAGGCCTTCCATGAAGGAGGTGCTACACATATTGCTCAGCTGTGGAGAAGGATTTGTGTTTGGAGAGGGGAGTGTTAGGCAATATGAAGGTGCTCCCCTTCTTAAGAACTCAAAATGA	3012	0.3904	MKIRENTNTHMTIPFYHYLTIFLILSHARSETQMHEQELAVLLKIKQHLQNPSFLSHWTPSNTSHSHCFWPEITCTSGSVTGLALGNRNISQTLPPFMCDLKNLTHVDFRNNSIPGKFPTFLYNCSKLVYLDLEMNDIHGSIPDDVDNLVNLLHLNLGSTSLSGDIPTSIGRLKQLIFLQLQYCLFNGTFPAENISNLFNLEFLDMSSNLDLPPSKLPSSLTRLKKLKFFHMYSSNLFGEIPETIGEMVALENLDISRSNLTGHIPKGLFMLKNLSILYLFKNSLSGEIPDVVEALNLTELDLAENNLAGKIPHDFGKLQNLTWLSLSLNNLSGEIPQSIGRLPSLEHFRVIFNNLSGILPPDFGRYSKLKSFLVASNSFSGSLPENLCYQGQLLNLSAYENYLSGELPQSLGQCSSLVDLKIYSNGFSGSIPSGLWTFSLSTFMVSNNKFTGELPERLSSSVSRLEISHNQFYGRIPTGVSSWTNVVVFDASKNYLNGSFPKELTGLPKLTTLLLDQNQITGPLPSDIISWKSLVTLNLSHNQLSGPIPDAIGLLPVLSQLDLSENQFSGQVPSVLPRLTNLNLSSNHLSGRVPSEFEISVYSTSFLNNSGLCADTPTLNLRLCNVAFARPTKGSSWSLALILCLVAVAVLLALSIPLLIIKLYRRRKQGLDNSWKLISFQSLSFTESNILSSLVEHNVIGSGGFGTVYRVPVDDLGYVAVKRISSNRKLDQKLENSFRAEVKILSNIRHKNIVKLMCCISNDDSMLLVYEYLENRSLDRWLHNKSKSSSVSGSVHNFVLDWPKRLQIAIGVAHGLCYMHHDCSPPIVHRDVKTSNILLDAQFNAKIADFGLARMLMKPGELATMSSVIGSFGYMAPEYVQTTRVSEKIDVFSFGVVLLELTTGKEANYGDEHSSLAEWAWRHIIVGSEIEELLDYEFMDPSYKNEMCCVFKLGVLCTSTLPTNRPSMKEVLHILLSCGEGFVFGEGSVRQYEGAPLLKNSK	1003

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g00083	1003	Pfam	Protein kinase domain	697	974	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca08g00083	1003	ProSiteProfiles	Leucine-rich repeat profile.	534	556	IPR001611	GO:0005515
	Cca08g00083	1003	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	828	840	IPR008271	GO:0004672\|GO:0006468
	Cca08g00083	1003	SUPERFAMILY	L domain-like	45	359	-	-
	Cca08g00083	1003	PANTHER	LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN	15	1002	-	-
	Cca08g00083	1003	SMART	serkin_6	695	977	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca08g00083	1003	SUPERFAMILY	RNI-like	297	597	-	-
	Cca08g00083	1003	ProSitePatterns	Protein kinases ATP-binding region signature.	701	723	IPR017441	GO:0005524
	Cca08g00083	1003	Gene3D	Ribonuclease Inhibitor	352	623	IPR032675	-
	Cca08g00083	1003	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	15	1002	-	-
	Cca08g00083	1003	Pfam	Leucine rich repeat	297	356	IPR001611	GO:0005515
	Cca08g00083	1003	ProSiteProfiles	Protein kinase domain profile.	695	977	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca08g00083	1003	Gene3D	Ribonuclease Inhibitor	194	351	IPR032675	-
	Cca08g00083	1003	Pfam	Leucine rich repeat N-terminal domain	36	75	IPR013210	-
	Cca08g00083	1003	SUPERFAMILY	Protein kinase-like (PK-like)	687	976	IPR011009	-
	Cca08g00083	1003	Gene3D	Ribonuclease Inhibitor	35	193	IPR032675	-
	Cca08g00083	1003	Gene3D	Phosphorylase Kinase; domain 1	672	773	-	-
	Cca08g00083	1003	Gene3D	Transferase(Phosphotransferase) domain 1	774	982	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g00083	Cca-Chr8	1075060	1078774	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g00083	32	999	Receptor kinase-like Gene Family	AT5G25930	50.000	0.0	907

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Cca08g00083		Pkinase	2.8e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g00083	-		-	gmx:100819744	1578.15