Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00082 ATGGAACTGTTCACCCCATCGTGTCTCAAGTTTCTATTTTACTCTCTTGTGATCTTATTCCTTATTCTTACTCGTGCAAACTCTCAATCTCAGTTGCATGATCAAGAACATGCAACACTACTTAAGATAAAGCAGTCTCTTGAAAACCCTTCATTCCTCAGTCACTGGACCTCATCAAACTTCTCTTACTGCTCTTGGAAAGAGATAACATGCAACACTGGCTCTGTCACTGGTTTGACTTTGGCCAACGGAAACATCGATCAAACCATACCCTCTTTCATATGTGACCTCAAAAACCTCACACATGTTGATTTCAACAACAATTTCATTCCTGGGGAGTTCCCAACTTCTCTCAACAATTGCTCCAAGTTGGAGTACCTAGACCTGTCCATGAACAACTTTGTTGGTAGCATCCCTCATGACATTGACAGGTTCTTTAATTTGCAGTATCTTAACCTCAGTTATACCAACTTCTCTGGTGACATTCCAGCTAGCATTGGAAGGCTAAAGGAACTGAGACATCTTGATCTTCAATACTGTCTACTCAATGGAACCTTCCCTGCTGAGATTGGCAACTTGTCCAATCTTGAAACCTTGGACTTGTCCTCTAACATTTTCGCTCCTTCGAGGTTGCACAATAACTGGACACTGTTGAACAAGTTGAAGGAATTTTACATGTTTGACTCCAACTTGGTTGGGCAGATCCCTGAAACCATTGGAGACATGGTGGCTTTGGAGATTTTGGATATCTCACAAAACAGTTTGAGTGGACAAATTCCCAAGGGTTTGTTCCTGCTGAAGAATCTGAGCATAATGTTTCTTTCGAGAAACAAACTTTCTGGGGCATTACCTGATGTGGTAGAGGCATTGAATTTGACCATCATTGATCTCACACAGAATGGTATCTCAGGAAAAATACCAGATGGTTTTGGAAAGCTCCGAAAGTTAACTGGTTTGGCTTTGTCTTTGAATAACTTGCAAGGGGAGCTACCACAAAGCTTAGGCCTTCTTCCATCTTTGATAGATTTTAAAGTATTTTCCAACAATTTATCAGGTACCCTTCCTCCAGACTTTGGCCGCTCATCGATGCTTAAAACGTTTATGATTTCAACTAATACTTTTAGTGGAAAGCTACCAGAGAACTTGTGCTATAATGGTCACTTGCTTAACATATCTGTCTATGAAAATTATCTAAGTGGAGAGTTGCCACAATCACTAGGGAATTGTAGTAGCCTGATGGATCTGAAAATTTATAGTAATGAGTTTTCTGGTAGCATTCCTAGTGGTCTTTGGACTTTCAACTTGTCAAATTTCATGGTGAGCTATAATAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCACCAACTATTTCACGCTTGGAGATAGATCACAATGAGTTTTATGGTAGGATTCCAACTGGGGTATCTTCATGGACTACAGTGGTAGTGTTTAAAGCCAGTAAGAACCACCTTAATGGGAGTATTCCAAAAGAGTTAACATCTCTTCCCAAGCTAACAACTCTTTGGCTTGATCATAACCAGTTCACTGGACCACTTCCATCAGATATAGTATCATGGAAGTCCCTTGCATTACTAAATTTGGGCCAAAACCAACTCTCTGGACATATCCCGGATTCAATTGGTTTGTTACCAGTCCTTAGTGAACTTGACTTGTCAGAAAACCAATTATCTGGTGAAATTCCTTCTGTACTTCCCAGACTCACCATTCTCAATCTATCCTCCAATTATTTAACAGGGAGGGTTCCAAGTGAACTTGAAAATTCTGCTTTTGCCAGAAGCTTTTTGAACAATTCTGGCCTCTGTGCTGATACCCCAACATTGAATCTCAGGTTGTGCAATTCTAGCCCTCAAAGGAAAAGCAATGACTCATCTTGGTCTCTTGCTTTGATTATAAGCCTGGTGGTTGTGGCATGCTTCCTGGCTTTGTTGACATCACTCTTGATCATCAAATTTTACAGAAAAAGAAAGCAAGGCTTGGAAGGTTCATGGAAGCTCATTTCCTTTCAAAGGCTGACTTTCACTGAATCAAACATAGTGTCATCATTGACAGAACATAACATTATTGGCAGTGGTGGATACGGTGCAGTATACCGTGTTGCAGTTGATGGTTTAGGCTATGTTGCTGTGAAAAAGATTTGGGAAAACAAGAAGTTGGACAAGAATCTTGAGACCTCATTTCACACTGAAGTTAAAATATTGAGCAACATTCGTCACAGGAACATTGTGAAGTTGATGTGCTGCATCTCTAATGAGGACTCTATGCTCCTTGTGTATGAGTATGTGGAAAACCGTAGCCTTGACAGGTGGCTGCACAGGAAGAACAAGTCATCAGCCGTGTCAGGTTCAGTCCATCATGTTGTCCTTGATTGGCCAAAGAGAGTGcatatagccattggagctgcacaaggtttgagctacatgcatcatgattgctcaccacctattgtgcatcgcgatgtgaaaacaagcaacattcttttggatgctcaattcaatgcaaaagttgctgattttggtctggctaggatgttAATGAAGCCAGGGGAACTTGCTACCATGTCATCAGTTATTGGCTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTCGAGTCAGTGAAAAGATTGATGTATTCAGCTTTGGAGTGATCCTATTGGAACTGACAACTGGTAAACAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAGTGGGCATGGCGCCACCACCAGTTAGGAAGCAACATAGAAGAGCTTCTTGACAAAGAAGTCATGGAAACTAGTTACTTGGATGGCATGTGTAAGATTTTCAAACTAGGGGTCATGTGTACTGCAACACTTCCTGCTAGTAGACCTTCCATGAAGGAGGTCCTGCAAGTATTGCTTTCTTTTGAAGAGTCATTTTCTAAAGGAGAGAGCAATATTGGCCACTATGATGATGTTCCCCTTCTTAGAAATTCAAAAAGAGAGCATAAGTTGGATGTTGATAATGATATCTAA 3027 0.3882 MELFTPSCLKFLFYSLVILFLILTRANSQSQLHDQEHATLLKIKQSLENPSFLSHWTSSNFSYCSWKEITCNTGSVTGLTLANGNIDQTIPSFICDLKNLTHVDFNNNFIPGEFPTSLNNCSKLEYLDLSMNNFVGSIPHDIDRFFNLQYLNLSYTNFSGDIPASIGRLKELRHLDLQYCLLNGTFPAEIGNLSNLETLDLSSNIFAPSRLHNNWTLLNKLKEFYMFDSNLVGQIPETIGDMVALEILDISQNSLSGQIPKGLFLLKNLSIMFLSRNKLSGALPDVVEALNLTIIDLTQNGISGKIPDGFGKLRKLTGLALSLNNLQGELPQSLGLLPSLIDFKVFSNNLSGTLPPDFGRSSMLKTFMISTNTFSGKLPENLCYNGHLLNISVYENYLSGELPQSLGNCSSLMDLKIYSNEFSGSIPSGLWTFNLSNFMVSYNKFTGELPERLSPTISRLEIDHNEFYGRIPTGVSSWTTVVVFKASKNHLNGSIPKELTSLPKLTTLWLDHNQFTGPLPSDIVSWKSLALLNLGQNQLSGHIPDSIGLLPVLSELDLSENQLSGEIPSVLPRLTILNLSSNYLTGRVPSELENSAFARSFLNNSGLCADTPTLNLRLCNSSPQRKSNDSSWSLALIISLVVVACFLALLTSLLIIKFYRKRKQGLEGSWKLISFQRLTFTESNIVSSLTEHNIIGSGGYGAVYRVAVDGLGYVAVKKIWENKKLDKNLETSFHTEVKILSNIRHRNIVKLMCCISNEDSMLLVYEYVENRSLDRWLHRKNKSSAVSGSVHHVVLDWPKRVHIAIGAAQGLSYMHHDCSPPIVHRDVKTSNILLDAQFNAKVADFGLARMLMKPGELATMSSVIGSFGYMAPEYVQTTRVSEKIDVFSFGVILLELTTGKQANYGDEHSSLAEWAWRHHQLGSNIEELLDKEVMETSYLDGMCKIFKLGVMCTATLPASRPSMKEVLQVLLSFEESFSKGESNIGHYDDVPLLRNSKREHKLDVDNDI 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00082 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Cca08g00082 1008 SUPERFAMILY Protein kinase-like (PK-like) 683 970 IPR011009 -
Cca08g00082 1008 Gene3D Ribonuclease Inhibitor 186 288 IPR032675 -
Cca08g00082 1008 Gene3D Ribonuclease Inhibitor 289 381 IPR032675 -
Cca08g00082 1008 SUPERFAMILY RNI-like 290 594 - -
Cca08g00082 1008 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Cca08g00082 1008 ProSiteProfiles Protein kinase domain profile. 689 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00082 1008 SMART serkin_6 689 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00082 1008 Gene3D Ribonuclease Inhibitor 382 628 IPR032675 -
Cca08g00082 1008 Gene3D Ribonuclease Inhibitor 33 185 IPR032675 -
Cca08g00082 1008 Pfam Protein kinase domain 691 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00082 1008 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Cca08g00082 1008 PRINTS Leucine-rich repeat signature 553 566 - -
Cca08g00082 1008 PRINTS Leucine-rich repeat signature 571 584 - -
Cca08g00082 1008 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 1001 - -
Cca08g00082 1008 CDD STKc_IRAK 695 970 - -
Cca08g00082 1008 SMART LRR_typ_2 571 599 IPR003591 -
Cca08g00082 1008 SMART LRR_typ_2 169 193 IPR003591 -
Cca08g00082 1008 SMART LRR_typ_2 97 121 IPR003591 -
Cca08g00082 1008 SMART LRR_typ_2 502 526 IPR003591 -
Cca08g00082 1008 SMART LRR_typ_2 242 266 IPR003591 -
Cca08g00082 1008 SUPERFAMILY L domain-like 46 372 - -
Cca08g00082 1008 Gene3D Transferase(Phosphotransferase) domain 1 768 989 - -
Cca08g00082 1008 Gene3D Phosphorylase Kinase; domain 1 667 767 - -
Cca08g00082 1008 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00082 Cca-Chr8 1058202 1061995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00082 30 1004 Receptor kinase-like Gene Family AT5G25930 49.344 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca08g00082 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00082 - - gmx:100798963 1717.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00082 08 1058202 1061995 Cca08g00082 08 1058202 1061995 ECH