Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00077 ATGGGGAGAGCCACCAGGTGGGTGAAGAGCTTGTTTGGCATTAAAAGAGAGAAAGAGCACAAACAAAACTCAAAGTGTGTTGAGTCCAAAAGCATGGAATGTGCTAATAATTCAAGAGTTTTGTGTCACAATCCAGGTACTATACCCCCCAACATTTCCCAAGCAGAGGCTGCATGGTTGCAATCTTACTGCTCTGAAAAGGAACAGAACAAGCACGCCATtgcagttgccgccgccacggcagctgctgcagatgctgctgtggccgctgcacatgctgcGGTGGCCGTTGTTAGGCTCACCAGTCAAGGAAGGGGTGGCACCATGTTTGGTGTTGGACCTGAGATGTGGGCTGCCATCAAGATTCAGACTGTGTTTAGAGGATACCTGGCAAGGAAGGCACTGAGGGCATTAAAGGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACCCTGCATAGTATGCAGGCTCTTGTTAGAGCTCAAGCTACAATTCGGTCCCACAAATCTCGCAGGCTCATGAGCACAGAGAATGAAGCATATAGATCTCAGAGCCGAGCAAGAAAATCCATGGAAAGGTTTGATGATACTAGGAGTGAGTATGCAGTTCCCATACACAGTAGAAGGGTATCATCATCTTTTGATGCCACAAACAACAATAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTGGACACTGGCAGGCCTAAGTCAAGGTCTAGAAGGACAATATCAGATTTTGGTGATGAACCATCATTTCAGGGCCTTTCCTCTCCCTTCCCAATTTCATACAGAACGACCCCAACACGTTTGTCCACACCATACCAAAGGAATTTTCAGGACTCTGAATGGGGGTTAACAGGAGAAGAGTGTAGGTTCTCCACAGCACAAAGCACTCCACGCTTCAGACATTCTTGTAGTTGTGCACCTATGACACCAAAGAGTGTGTGCACTGATAACTTGTTCCCCGGGCAATATTTTGGGAATTTTCCAAACTACATGGCTAGTACCAAGTCTTTTAAGGCCAAATTGAGGTCTCATAGTGCTCCAAAGCAAAGACCAGAACCAGGTCCAAGGAAGAGGCTCTCACTCAATGAAATGATGGAGTCTAGGAGTAGCTTGAGTGGGGTTAGAATGGAGAGGTCTTGCTCACAGGTTCAAGAAGTCATTAATTTCAAGAATGCTGTGATGAGTAAGCTTCATAAATCCTCAGAATCTGTTAGGGAAACAGATAGAAACTACTTCCACCAGAGGAGGTGGTAA 1290 0.4349 MGRATRWVKSLFGIKREKEHKQNSKCVESKSMECANNSRVLCHNPGTIPPNISQAEAAWLQSYCSEKEQNKHAIAVAAATAAAADAAVAAAHAAVAVVRLTSQGRGGTMFGVGPEMWAAIKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALVRAQATIRSHKSRRLMSTENEAYRSQSRARKSMERFDDTRSEYAVPIHSRRVSSSFDATNNNSVDGSPKIVEVDTGRPKSRSRRTISDFGDEPSFQGLSSPFPISYRTTPTRLSTPYQRNFQDSEWGLTGEECRFSTAQSTPRFRHSCSCAPMTPKSVCTDNLFPGQYFGNFPNYMASTKSFKAKLRSHSAPKQRPEPGPRKRLSLNEMMESRSSLSGVRMERSCSQVQEVINFKNAVMSKLHKSSESVRETDRNYFHQRRW 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00077 429 Pfam IQ calmodulin-binding motif 117 136 IPR000048 GO:0005515
Cca08g00077 429 Pfam IQ calmodulin-binding motif 142 156 IPR000048 GO:0005515
Cca08g00077 429 PANTHER IQ-DOMAIN 5-RELATED 1 412 - -
Cca08g00077 429 MobiDBLite consensus disorder prediction 239 255 - -
Cca08g00077 429 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 412 - -
Cca08g00077 429 ProSiteProfiles IQ motif profile. 163 192 IPR000048 GO:0005515
Cca08g00077 429 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Cca08g00077 429 Pfam Protein of unknown function (DUF4005) 308 385 IPR025064 -
Cca08g00077 429 Gene3D - 115 163 - -
Cca08g00077 429 SMART iq_5 114 136 IPR000048 GO:0005515
Cca08g00077 429 SMART iq_5 137 158 IPR000048 GO:0005515
Cca08g00077 429 MobiDBLite consensus disorder prediction 182 204 - -
Cca08g00077 429 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Cca08g00077 429 MobiDBLite consensus disorder prediction 223 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00077 Cca-Chr8 982331 984491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00077 1 388 IQD Protein Family AT3G16490 52.475 1.44e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00077 - - gmx:100788710 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00077 08 982331 984491 Cca08g00077 08 982331 984491 ECH