Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00076 ATGTCAAACTTGCATTACATGTTCAGCATGTTAGCAGTTCTTGTTCTTCTTCAAAATCCTAGTATTGTGCATTGTCATACCAAGGGACTTAGACCAAGACGTTCTTCAGGGAATGGTTTATCAACCAACATGACTAGAGTGCAGTATTCTGAACAGCAATTCATGAAATGGGTGAATTTTGTTGGTACCCTCAAACACTCAGTTTTTAAGGCAGCTAAGAATAAGCTTGTGGCTTCTTACACTTTGCACGTTGATAAGAATCCTAGTATTGGAGATTTCACCTCAATTCAAGAAGCCATTGATTCTCTTCCATTCATCAATCTCGTGAGAGTGGTCATAAAAGTCCATGCAGGGGTCTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTACATAACAATAGAAGGAGCTGGTGCAGCTAAAACCATTATTAAATGGGGTGACACTGCTCAAACACCTGGCCCAAATGGAAGGCCACTAGGAACCTATGGTTCAGCAACTTTTGCTGTTAATTCACCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAGTTGGAAAGCAAGCAGTGGCATTAAGGATTTCAGCAGATACAGCAGCATTTGTTGGATGCAAATTCTTAGGAGCTCAAGACACACTTTATGATCATGTGGGCAGACACTACTATAAGGATTGTTACATTGAAGGCTCTGTTGATTTCATATTTGGCAACTCTCTCTCGCTGTTTGAGGGATGTCACGTGCATGCCATAGCAGAGAATACAGGGGCCGTAACAGCACAAGGAAGGAGTAGTATGTTGGAGGATACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCAGGGGCACTATACCTTGGAAGGGCTTGGGGACCCTTTTCTCGCGTGGTCTTTGCTTACACATATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGATCCTAACCGTGAAATGACAGTATTCTATGGACAGTACAAATGCACAGGACCTGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCGAGAGAACTCACTGACGAAGAAGCCAAACCTTTTCTTTCCCTTGCCTTTATTGATGGAACTGAATGGATCAAATTCTAG 1143 0.4287 MSNLHYMFSMLAVLVLLQNPSIVHCHTKGLRPRRSSGNGLSTNMTRVQYSEQQFMKWVNFVGTLKHSVFKAAKNKLVASYTLHVDKNPSIGDFTSIQEAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSYITIEGAGAAKTIIKWGDTAQTPGPNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGAVGKQAVALRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAENTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFLSLAFIDGTEWIKF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00076 380 Gene3D - 77 380 IPR012334 -
Cca08g00076 380 PANTHER PECTINESTERASE 1 378 - -
Cca08g00076 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 378 - -
Cca08g00076 380 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Cca08g00076 380 SUPERFAMILY Pectin lyase-like 77 379 IPR011050 -
Cca08g00076 380 Pfam Pectinesterase 90 374 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00076 Cca-Chr8 976552 980070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00076 2 378 Carbohydrate Esterase AT5G47500 43.386 5.35e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00076 K01051 - gmx:100793314 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00076 08 976552 980070 Cca08g00076 08 976552 980070 ECH