Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00066 ATGGAGAATAGCTGCATTCTGGTTCTGGCTTTTCTCCTCCTCGTTCTCCACTCAAGTACGACAAAAGCTGCCTTCAgtgttggtggtggtgtaggtgtaggtgttggtgttggcaatggaaatggtggtggtggtggtggaggtggtggagtggtCTGGGTTGGAGGAGGGATTAACAGCCCTGAGCCACCTGGATCTTCAGTGCCAAAGCCTGAAGGAGCTTACACAGCACTTCAGGCATGGAAATGTGCAATCACTGAAGACCCTCTTAAGATTTTAGAAAGTTGGGTTGGTCCTAATGTGTGTTCCTACAAAGGGGTCTTTTGTGCAAATCCTCAAGATGAAATGGATGCATCAGCTTTCCCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTGCAAGGAACTCTTGTCAAAGAGCTCTCTCTACTCACTGATTTGTCTCTTTTCCACCTCAACAGTAACAGATTCACTGGCACTGTTCCTGATGCATTCAGAGACCTGGTGTTTCTGGAAGAGTTAGACCTCAGCAATAACCAGCTTTCAGGTCCTTTCCCTGCTGCTACTTTGTACATGCCAGGCCTCATCTACTTGGACCTCAGATTCAACTACTTCTCTGGGGCCCTCCCTCAGGAACTTTTCAGCAAGAATCTGGATGCAATATTCCTCAATAACAATCAATTTGAAGGTGAAATTCCACAAAACTTGGGTGGTTCCCCAGCCTCAGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTGGGCTTCATGGGTTCCAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAATTGGTTGCATTCCCGAGGGAGTAGGGCTATTCACAGAGATGCAAGTTCTGGATGTGAGCTTCAACTCACTCACGGGTCATTTGCCAGACACACTATCTTGCCTGCAAGACATAGAAGTTCTCAATGTGGCACATAACAAGCTTTCTGGGGAGTTATCAGATGTAGTCTGTTCTTTGAGAAGCCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCTGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTTGGTTTTGATTTCTCACTAAATTGCATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAGTGCTCTGTCGTCCCAGGTGGTAGCCTAAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGCTGTAAGTAAGTCTAAGCACATTGATCCCAATTCATCATCCCCTTGA 1275 0.4267 MENSCILVLAFLLLVLHSSTTKAAFSVGGGVGVGVGVGNGNGGGGGGGGGVVWVGGGINSPEPPGSSVPKPEGAYTALQAWKCAITEDPLKILESWVGPNVCSYKGVFCANPQDEMDASAFPVVAGIDLNHANLQGTLVKELSLLTDLSLFHLNSNRFTGTVPDAFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGALPQELFSKNLDAIFLNNNQFEGEIPQNLGGSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLIGCIPEGVGLFTEMQVLDVSFNSLTGHLPDTLSCLQDIEVLNVAHNKLSGELSDVVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSVVPGGSLSCLRIPTPRPLVCGSMAVSKSKHIDPNSSSP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00066 424 Gene3D Ribonuclease Inhibitor 241 363 IPR032675 -
Cca08g00066 424 SUPERFAMILY L domain-like 87 358 - -
Cca08g00066 424 Gene3D Ribonuclease Inhibitor 74 240 IPR032675 -
Cca08g00066 424 PANTHER LRR/EXTENSIN 1 424 - -
Cca08g00066 424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 424 - -
Cca08g00066 424 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515
Cca08g00066 424 PRINTS Leucine-rich repeat signature 172 185 - -
Cca08g00066 424 PRINTS Leucine-rich repeat signature 312 325 - -
Cca08g00066 424 Pfam Leucine rich repeat N-terminal domain 75 109 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00066 Cca-Chr8 889429 891202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00066 69 397 Leucine-rich Repeat extension Gene Families AT3G24480 51.045 7.27e-107 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00066 - - gmx:100775544 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00066 08 889429 891202 Cca08g00066 08 889429 891202 ECH