Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00065 ATGAGTAAGATGAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTGATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCCTACCAGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTAATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGAATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGGCACTTTTTCCACAGACCCTCAAAGGCTTACACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAGTGTGACTTGCAAGGTGGAGAAACCAGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAGCAAAAGGGTTGCAAGAAAATTCTTGTCCTCTACACCAACTTTGGGAAGAACAGAAAGCCTGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGGCAGCATGAGGAAGAGAAAGAGGGGGAACTTGTGGTGTCGAAGATATTCTACCAAACACAGCCAAGGCAGTGCAATTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTGGTAGAAGGGACAGTGGAAGTGGAAGCTGTTCTTCAAAGGAAATTGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGTGTTCCTCCAATCACGAGTTTCACTCATCATCACCCCTTGGATATTCAACACCTAAAACCCGATCATTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCCACAGCAAGAGAAGTGGTGCAAGCATCAGGTTCATGTGAAGAAGTGCATGAAAGGcaacgaccacaacatgtagctcatcatcatcaacaacaacatcaacagcatcagcatgctcatcatcaGATTTCAAACTCAGCTTTTCATATCAGTAGGCCGTCACATCCCATCTCTACAATTATCTCCCCGCCTCCCCTCCATCACACATCCATCATTCTTGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTCCAGCAACAGCAGCAACAACATCATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCGTCAATCACAAACCCTCAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGATCCAGACAACCCGGATCACCATGGGTAG 1359 0.4305 MSKMSNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSGRRDSGSGSCSSKEIVTHRDEMSAVVGVPPITSFTHHHPLDIQHLKPDHFSFIPFRKSFDEVGIGEASTAREVVQASGSCEEVHERQRPQHVAHHHQQQHQQHQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHHKLGGRSASGLEELIMGCTSTEIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00065 452 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Cca08g00065 452 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 435 - -
Cca08g00065 452 MobiDBLite consensus disorder prediction 215 246 - -
Cca08g00065 452 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Cca08g00065 452 MobiDBLite consensus disorder prediction 215 248 - -
Cca08g00065 452 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 435 IPR044799 GO:0003700
Cca08g00065 452 MobiDBLite consensus disorder prediction 321 341 - -
Cca08g00065 452 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Cca08g00065 452 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00065 Cca-Chr8 873289 879001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00065 11 449 NAC Transcription Factor Family AT5G56620 54.031 4.63e-141 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca08g00065 NAM 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00065 - - gmx:100795246 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00065 08 873289 879001 Cca08g00065 08 873289 879001 ECH