Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00060 ATGATGCTCGGAGAGCACCATAGAGCCAATCCAACGGTTCACGTGCCACCGTGGCCAACTGACGATAATCCAACGGCTGAGATGTTTTCGCCGTTTCTAACTAACGACGCCAATGCCGGCGAGTACTCTCCGTACTATCTCCAGGAGGCGCTAACGGCGCTGCAGCGTTATCTACCGTCAAACGAAACGGACGCCGATTCTGACTCGGAGGTTGCGATGGACGCGCCGGTCGACGCGTATTCCTGCGACCACTTCCGCATGTTCGAGTTCAAGGTGAGGCGGTGCGCACGTGGCAGATCGCACGACTGGACGGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCGCGCCGCCGCGACCCGCGGAAGTTCCACTACTCCGGCACGGCGTGCCCGGAGTTTCGCAAGGGAAGCTGCAAAAAGGGCGACGCGTGCGAGTTCGCGCACGGCGTCTTCGAGTGCTGGCTCCACCCCGCGCGCTACCGGACTCAGCCTTGCAAGGACGGCACCAGCTGCCGCCGGCGCGTGTGCTTCTTCGCGCACACGCCGGAGCAGCTAAGGCTGGTTCCGATGCAGAGTCCGAGAAGCTCAAACTCGCCGGAGTCCTATGATGGTTCTCCGATGAGGCAAATCTCGATGGCGCCGTTTATGTCTTCTCCGGCGGCGTCTGTCTCCCCGCCGGAGTCGCCGCCGGTATCGCCGTCGATGAACGAGATGGTGGCTTCTCTGCGGAATTTGCAGCTTGGGAAGGTAAAATCCATGCCTCAGAAACGAAACGCGTCGATCGGGATCGGGTCACCTTGCTTCGGGTCTTCACCGAGAGGTTCGGTGCTCCGACCCGGTTTTTGTAGCCTCCCGAGTACGCCAACTCAGCAACCGGTTCGGTCGGGTGTTAGTTATTTCGATCTTTGGGAGAAGAGTTGTTGCGAGGAAGAGCCGGTGATGGAGAGGGTGGAGTCCGGGAGGGACATTAGGGCTAAGATGTTTGAGAAGCTGAGCAAGGAGAATTCCCTGGACGGGTCGGGTTCGGGTCAGGTAACCGGGGCTCCGGATGTTGGGTGGGTTTCAGAGCTCGTGAAGTGA 1080 0.6028 MMLGEHHRANPTVHVPPWPTDDNPTAEMFSPFLTNDANAGEYSPYYLQEALTALQRYLPSNETDADSDSEVAMDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMQSPRSSNSPESYDGSPMRQISMAPFMSSPAASVSPPESPPVSPSMNEMVASLRNLQLGKVKSMPQKRNASIGIGSPCFGSSPRGSVLRPGFCSLPSTPTQQPVRSGVSYFDLWEKSCCEEEPVMERVESGRDIRAKMFEKLSKENSLDGSGSGQVTGAPDVGWVSELVK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00060 359 MobiDBLite consensus disorder prediction 334 359 - -
Cca08g00060 359 PANTHER UNKEMPT FAMILY MEMBER 7 359 IPR045234 -
Cca08g00060 359 Gene3D - 125 187 - -
Cca08g00060 359 MobiDBLite consensus disorder prediction 190 210 - -
Cca08g00060 359 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Cca08g00060 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 149 IPR000571 GO:0046872
Cca08g00060 359 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Cca08g00060 359 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Cca08g00060 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00060 Cca-Chr8 777316 780486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00060 74 236 C2H2 Transcription Factor Family AT5G12850 56.213 1.06e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca08g00060 zf-CCCH 4e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00060 08 777316 780486 Cca08g00060 08 777316 780486 ECH