Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00059 ATGGGAAGGGCTCCATGCTGTGACAAATCTAACGTGAAAAGAGGGCCATGGTCTCCTGATGAAGATGCCACCCTCAAAAACTACCTAGAGAAACATGGCACTGGTGGTAATTGGATTGCTCTCCCCAAAAAAGCAGGCCTTAGGCGTTGTGGAAAAAGTTGTCGTCTAAGATGGTTGAACTATCTCAGGCCTCATATAAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATTATCTGCACCCTTTATGACACTATTGGAAGCAGGTGGTCCCTTATAGCAGCTCAATTTCCAGGGAGAACGGACAATGATGTGAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTCTTGGCAGAAAACACAAGTGTTGCCACAAGCAATAATTACACTTACTCTGAACAATTCTCAACTTTTACTGATCTTCAACCTCAAGTTGAGGCCTTTATCTTGGACCAAAAACTGAACTCACCTTGGTTTGGCTCCAACCATGTTTATGATTTGGAACAAACACCAATTCCAGTTCCTTTTCCAATGCCTCAAGAATTTGAAGCTTTTGATACTGGAAGCAGTTGTAGTAGTACACCACCCTCTAAGGAAGTTTCAATGCTTTCCAATGCAGCTTGCTTAGTACAGCACAACAAACATACACAATGGTTTGGTTATGACCACCATGCAAATCATGAGGATGATCCAACTTTGCTTCAGGTTGTGCTTGAAGATCTGCTGAATCATGGATTTGCTTCTTCTAGTAGCCAAGTTGATCTACCAAAAAAAACTTGA 783 0.4163 MGRAPCCDKSNVKRGPWSPDEDATLKNYLEKHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTLYDTIGSRWSLIAAQFPGRTDNDVKNHWNTKLKKKFLAENTSVATSNNYTYSEQFSTFTDLQPQVEAFILDQKLNSPWFGSNHVYDLEQTPIPVPFPMPQEFEAFDTGSSCSSTPPSKEVSMLSNAACLVQHNKHTQWFGYDHHANHEDDPTLLQVVLEDLLNHGFASSSSQVDLPKKT 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00059 260 CDD SANT 71 113 IPR001005 -
Cca08g00059 260 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca08g00059 260 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca08g00059 260 Gene3D - 70 137 - -
Cca08g00059 260 PANTHER OS09G0431300 PROTEIN 1 169 - -
Cca08g00059 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Cca08g00059 260 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Cca08g00059 260 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca08g00059 260 CDD SANT 16 62 IPR001005 -
Cca08g00059 260 Gene3D - 6 68 - -
Cca08g00059 260 SMART sant 13 64 IPR001005 -
Cca08g00059 260 SMART sant 67 115 IPR001005 -
Cca08g00059 260 PANTHER OS09G0431300 PROTEIN 1 169 - -
Cca08g00059 260 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca08g00059 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00059 Cca-Chr8 769858 771260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00059 1 118 MYB Transcription Factor Family AT5G65790 81.356 1.55e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g00059 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00059 K09422 - gmx:778160 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00059 08 769858 771260 Cca08g00059 08 769858 771260 ECH