Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00058 ATGACAAGTTCGATTGGGTGTATACTGTTGCTGACACATTGTGTTGCCCTTGTAGCTTTAGTTTATGCACAACAACAAACAGGCTTCATAAGCATTGATTGCGGTGGTCCTCAAAACTTTGAGTACACAGATGATACAACTAAAATAAAGTACGGGACTGATGGAGCCTACATACAAACTGGGGTTAATAAGAACATTTCCTCTAACTATGCATACCCTAATAATCCCATGCTGCCACAACCACTCTCAGATCTCAGAAGTTTTCCTGAGGGAGAAAGGAACTGTTACAAGTTAATAGCTGGAAGAAAAGGCAGTTTACATTTGATAAGAGCTTCCTTTTTATATGGAAACTATGATGGAGAAAACAAGCCACCTGAGTTTGATCTCTATGTTGATGTCAATTTCTGGTCAACGATCAAATTTAGAAATGCCTCAGATGAAGTTACAATGGAAACAATCAGTGTGGCACAATCAGGGGTGACAAATGTTTGTCTAGTGAACAAGGGAGAAGGAACTCCTTTTATCTCGGGATTGGAACTTAGACCACTTAATGCTTCTATTTATAACACTGAGTTTGGGGAATTTGGGTCACTAACACTTTTCAAAAGATGGGACTTTGGATCACTCAATGGAAGTGGTAGATATGAGGATGATATTTATGATAGAATTTGGTCACCCTATAATTCCTCATCTTTGGATTCTGTAAGCACTTCCACAGTAATAAATGTCAATGGTGATGGCTATAAAGCACCATTTGAAGTCATCAAAACTGCTGCTACAACACCAAAGAGTGACAATGATCCTTTAGAATTTTCTTGGACCCCAGATGATCCAAGTTGGAAATTTTATGTCTACTTGTACTTTGCCGAAGTGGAGCAGCTTAATAAAACTCAACTGAGGAAATTTAATATATCCTGGAATGGATCTCCATTGTTTGAATCCATAGTACCACATTACTTGTTTGCAACCACCCTATCTAATTCAAAATCCTTGGTGGCAAATGAACATCGTATTTCTATACATAAAACAAAGGATTCAACCCTTCCACCCATTCTTAATGCAGTTGAGATTTATGTAGTAAGACAATTAGATGCACTTCCAACATTTGAACAAGATGTTGATGCTATGATGGCAATAAGGGAAAACTATAGGATTCAAAGAAATTGGATGGGTGATCCATGTGAGCCAAAGAACTATTCTTGGGAAGGCTTAGAATGCAACTATACCACTTCGCTTCCTCCCCGAATTATATCTCTGAATATGAGCTCAAGCAGTTTAAGTGGAACAATAACTTCTGCCATTTCCAATCTTTCCTCATTGGAATCTTTGGACTTGCATAACAATAGCTTAACTGGAGCAATGCCTCAGTTTTTGGAGGAATTGAAATACCTTAAATATTTGGATTTAAGGAGCAATCTATTTTCAGGTTCTGTTTCTGCCACACTTTTAGAAAGATCAAGGACCGGATCACTCACATTGAGGGTGGATGATCAAAATCATGGTGACACCAAAGGGAACAATAAAACTAAGAAAATTGTTATTCCCATAGTGGCATCAGTATTATCGATTTTAGTTCTATTGATTGTTTTCATTCTCGTTCAGAAACTTAGAAGAAATGAAAGATCAGATGAAGAGATAAGTATGCTCAACAAAGGAGGAAAAACTGTAACATCAAAGAATTGGCAATACACTTATTCAGAGGTGTTGAACATTACCAACAACTTTGAAATGGCAATTGGTAAGGGAGGATTTGGAACCGTGTATTGTGGTCAGGTGAAAGATGGCAAACAAGTTGCAGTCAAGATGCTTTCTCCATCATCAACTCAGGGGCCAAAGGAATTTCAGACTGAGGCTGAGCTTTTGATGACAGTTCATCACAAAAATTTGgtatccttcattggttactgtgatgatgataacaagatggcactcatatatgagtacatggccaacggcagcctcaaagaTTTTCTCTCACTCTCAGATGGAAATTCACATTCCTTGAGTTGGGAAAGGAGAATACAAATAGCAATCGATGCTGCAGAGGGGTTGGATTATCTACACCATGGATGCAAGCCACCTATAATACACAGGGATGTAAAGTCAGCCAACATTCTTTTAAGTCAAGACTTAGAAGCTAAGATAGCAGATTTTGGCCTCTCTAGGGAGTTTAGGAAAGAAAACCAAAATCAAGATTCTTCAATGATTTATAATGATGTTTCAAATGAAAAATCTGCAGTGATGGGCACAACAGGGTACCTTGACCCAGAGTACTACAAATTGGGGACCCTAAATGAGAAAAGTGACATCTATAGCTTTGGAATTGTTCTACTGGAATTAATCACAGGTCGTCCTGCAATATTGAAAAGTTTAGGCAACCCATTAATGCACATACTTGAGTGGATAAGATCTGAACTTGAAGGAGGAGATTTAAGTAGGATTTTAGATCCAAGGCTCCAAGGAAAATTTGATACTAGTTCTGGGTGGAAAGCTTTAGGAATAGCAATGGCATGTTCTGCATCAACCTCCAATCAAAGACCTACAATGAATGTTGTGCTAGCAGAGTTAAAACAATGCTTGAAATTGGAATCGCCTAATGAAACTGAAATATTTGTGGCCCCAAAACAAGTCTACAACGAATTTTATAGTTCATCTGAAGCATTTTCCTGTGATAGTGAATCTATCACCTATCCTTTCCCAAGATAG 2706 0.3681 MTSSIGCILLLTHCVALVALVYAQQQTGFISIDCGGPQNFEYTDDTTKIKYGTDGAYIQTGVNKNISSNYAYPNNPMLPQPLSDLRSFPEGERNCYKLIAGRKGSLHLIRASFLYGNYDGENKPPEFDLYVDVNFWSTIKFRNASDEVTMETISVAQSGVTNVCLVNKGEGTPFISGLELRPLNASIYNTEFGEFGSLTLFKRWDFGSLNGSGRYEDDIYDRIWSPYNSSSLDSVSTSTVINVNGDGYKAPFEVIKTAATTPKSDNDPLEFSWTPDDPSWKFYVYLYFAEVEQLNKTQLRKFNISWNGSPLFESIVPHYLFATTLSNSKSLVANEHRISIHKTKDSTLPPILNAVEIYVVRQLDALPTFEQDVDAMMAIRENYRIQRNWMGDPCEPKNYSWEGLECNYTTSLPPRIISLNMSSSSLSGTITSAISNLSSLESLDLHNNSLTGAMPQFLEELKYLKYLDLRSNLFSGSVSATLLERSRTGSLTLRVDDQNHGDTKGNNKTKKIVIPIVASVLSILVLLIVFILVQKLRRNERSDEEISMLNKGGKTVTSKNWQYTYSEVLNITNNFEMAIGKGGFGTVYCGQVKDGKQVAVKMLSPSSTQGPKEFQTEAELLMTVHHKNLVSFIGYCDDDNKMALIYEYMANGSLKDFLSLSDGNSHSLSWERRIQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSQDLEAKIADFGLSREFRKENQNQDSSMIYNDVSNEKSAVMGTTGYLDPEYYKLGTLNEKSDIYSFGIVLLELITGRPAILKSLGNPLMHILEWIRSELEGGDLSRILDPRLQGKFDTSSGWKALGIAMACSASTSNQRPTMNVVLAELKQCLKLESPNETEIFVAPKQVYNEFYSSSEAFSCDSESITYPFPR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00058 901 ProSiteProfiles Protein kinase domain profile. 573 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00058 901 PANTHER BNAC07G41790D PROTEIN 8 872 - -
Cca08g00058 901 Gene3D - 208 360 - -
Cca08g00058 901 SUPERFAMILY Protein kinase-like (PK-like) 558 875 IPR011009 -
Cca08g00058 901 SUPERFAMILY L domain-like 397 482 - -
Cca08g00058 901 Pfam Leucine rich repeat 418 473 IPR001611 GO:0005515
Cca08g00058 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Cca08g00058 901 Pfam Malectin-like domain 32 359 IPR024788 -
Cca08g00058 901 PANTHER OS07G0107800 PROTEIN-RELATED 8 872 - -
Cca08g00058 901 CDD STKc_IRAK 579 858 - -
Cca08g00058 901 Pfam Protein tyrosine and serine/threonine kinase 576 849 IPR001245 GO:0004672|GO:0006468
Cca08g00058 901 Gene3D Phosphorylase Kinase; domain 1 547 648 - -
Cca08g00058 901 Gene3D Ribonuclease Inhibitor 364 491 IPR032675 -
Cca08g00058 901 SMART serkin_6 573 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00058 901 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Cca08g00058 901 Gene3D Transferase(Phosphotransferase) domain 1 649 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00058 Cca-Chr8 754982 760787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00058 7 887 Receptor kinase-like Gene Family AT4G29180 49.944 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca08g00058 Malectin_like 1e-105 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00058 - - gmx:100793137 1475.3