Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00052 ATGGTGGAGAAGGCCAAGGGTAGAAAGGAGGAGGTGGTGACCAGAGAGTACACCATTAATCTCCACAAGCGCCTCCATGGCTGCACATTTAAGAAGAAGGCCCCCAAGGCGATTAAGGAAATTAGGAAGTTTGCTCAAAAAGCCATGGGGACCAATGATGTGAGGGTGGATGTGAAGTTGAACAAGTATGTCTGGAGTCAGGGAATCAGAAGTGTTCCAAGGAGGATTCGGGTGCGCATTGCTCGCAAGAGGAATGATGATGAAGACGCCAAGGAAGAGCTATATTCTCTTGTCACGGTTGTTGAAATACCCAAGGATGAGCTCAAAGGGTTGGGCACCAAGGTTATTGACGATGAAGATTGA 363 0.4793 MVEKAKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKDELKGLGTKVIDDED 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00052 120 CDD Ribosomal_L31e 9 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Cca08g00052 120 PANTHER 60S RIBOSOMAL PROTEIN L31 1 120 IPR000054 GO:0003735|GO:0005840|GO:0006412
Cca08g00052 120 Pfam Ribosomal protein L31e 11 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Cca08g00052 120 Gene3D - 9 120 IPR023621 -
Cca08g00052 120 PANTHER 60S RIBOSOMAL PROTEIN L31-2-RELATED 1 120 - -
Cca08g00052 120 ProSitePatterns Ribosomal protein L31e signature. 54 68 IPR020052 GO:0003735|GO:0005840|GO:0006412
Cca08g00052 120 SUPERFAMILY Ribosomal protein L31e 11 92 IPR023621 -
Cca08g00052 120 SMART Ribosomal_L31e_2 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00052 Cca-Chr8 722760 723598 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00052 2 120 Cytoplasmic Ribosomal Protein Gene Family AT2G19740 80.672 6.07e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00052 K02910 - gmx:100305583 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00052 08 722760 723598 Cca08g00052 08 722760 723598 ECH