Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00050 ATGGAACACATCAAAGATCCATCAATTTACCGCAATCCCGTCATATTGCAGAGCGAGGATTTAACCAAGTATATACTGGAGACTGCTGTTTACCCTCGAGAACCTCAGCCACTGAAAGAGTTGAGAGAAGCCACTAGGAATCACCCTTGGGGCTTCATTGCTACTTTACCGGATGCGGGTCAGCTAATCACCTTACTTTTGAAGCTGTTGAATCCCAAAAAGACCATTGAAGTGGGAGTGTTCACTGGTTACTCCCTTCTCCTCACTGCACTCAACATTCCTGATGATGGAAAGATTACCGCCATAGATATTGACAGGAAGGCTTATGAGGTTGGTTTACCAGTCATCAAAAAGGCTGGAGTAGAGCACAAGATTAATTTCATTGAGTCTCCTGCTTTACCAATCTTGGATAAACTACTTGAAGATCCTGCAAATGAAGGATCATTTGACTTTGCCTTCATTGATGCTGACAAAGAGAGCTACGTGAACTACCATGAGAGGCTTATAAAACTGGTCAAGATTGGTGGGTTACTTGTATATGACAACACACTGTGGGGTGGACGTGTTTCTTGGCCTGAAGACAAAGTTCCACCACACGCTAGGCCAGGGAGGGACGCTGCAATTGAATTTAACAAAAAAATCACAAAGGATTCTCGAGTTGAATTTGCTCTTACTTCCGTAGGGGATGGACTCAATATTTGTAGGCGTATTGCTTAA 717 0.4338 MEHIKDPSIYRNPVILQSEDLTKYILETAVYPREPQPLKELREATRNHPWGFIATLPDAGQLITLLLKLLNPKKTIEVGVFTGYSLLLTALNIPDDGKITAIDIDRKAYEVGLPVIKKAGVEHKINFIESPALPILDKLLEDPANEGSFDFAFIDADKESYVNYHERLIKLVKIGGLLVYDNTLWGGRVSWPEDKVPPHARPGRDAAIEFNKKITKDSRVEFALTSVGDGLNICRRIA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00050 238 CDD AdoMet_MTases 76 180 - -
Cca08g00050 238 PANTHER METHYLTRANSFERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 5 237 - -
Cca08g00050 238 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 18 236 IPR029063 -
Cca08g00050 238 Pfam O-methyltransferase 28 237 IPR002935 GO:0008171
Cca08g00050 238 Gene3D Vaccinia Virus protein VP39 8 238 IPR029063 -
Cca08g00050 238 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 14 237 IPR002935 GO:0008171
Cca08g00050 238 PANTHER O-METHYLTRANSFERASE-RELATED 5 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00050 Cca-Chr8 714641 716622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00050 15 237 Monolignol Biosynthesis Gene Families AT4G26220 62.332 4.69e-104 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00050 K00588 - gmx:100800911 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00050 08 714641 716622 Cca08g00050 08 714641 716622 ECH