Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00042 ATGGGTCGGCGAAAGAACAACAATCAGAGTTCCTCAAGCAAGGAAGACACTAACATGAATAACCACCATCGCTTTGAAGACGCTGACGAGCCTGTCGACGAGAGTTCCAACCTCGACCAATCCATGTGTCATATCGACGACTCCGATGATAAAACCAGCGCCGACTATTACTTCGACTCATATTCTCATTTTGGTATTCACGAAGAAATGTTGAAGGACACCGTGAGAACCAAGACGTATCAAAATGTTATTTATCAGAATAAGTTTTTATTCAAGAATAAAGTAGTTCTTGATGTGGGTGCTGGGACTGGGATTTTATCACTATTTTGTGCCAAAGCAGGGGCAGAACACGTTTATGCAGTTGAGTGCTCCCATATGGCCGACATGGCAAAGGAAATTGTTGAAGCTAATGGTTACTCTAATGTCGTAACAGTTTTGAAAGGAAAGATTGAAGAAATTGAACTTCCAGTTGCTAAAGTTGATATAATCATTTCAGAATGGATGGGGTATTTCTTGTTGTTTGAGAATATGTTAAATTCTGTGCTTTATGCACGTGACAAATGGCTTGTGGATGATGGAGTTGTGTTACCAGATAAAGCATCCCTCTATCTCACTGCCATTGAGGATGCAGACTACAAAGATGATAAAATTGAGTtttGGAACAATGTGTATGGATTTGACATGAGCTGCATCAAGAAGCAAGCCATAATGGAGCCTCTTGTTGACACAGTTGACCAGAATCAGTTAGCTACAAACTGCCAGCTACTCAAGACAATGGATATCTCAAAGATGTCTCCTGGGGATGCTTTATTCACAGCACCTTTTAAGCTTGTAGCTGAACGTGATGACTATATTCACGCACTTGTTGCATATTTTGACGTGTCATTTACAAAGTGTCATAAATTGATGGGCTTTTCTACAGGGCCAAGATCACGAGCAACACATTGGAAACAAACAGTCCTATACCTTGAAGATGTCTTGACCATATGTGAGGGGGAGGCAATTGTAGGGAGCATGACAGTTGCTCCAAATAAAAAGAATCCTCGTGATGTTGATATCATGCTCAAGTATTCATTGAATGGAAAGCGATGCAATATTTCAAGGGTTCAGTACTACAAGATGCGTTGA 1128 0.406 MGRRKNNNQSSSSKEDTNMNNHHRFEDADEPVDESSNLDQSMCHIDDSDDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNKFLFKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDDGVVLPDKASLYLTAIEDADYKDDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQLATNCQLLKTMDISKMSPGDALFTAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTICEGEAIVGSMTVAPNKKNPRDVDIMLKYSLNGKRCNISRVQYYKMR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00042 375 MobiDBLite consensus disorder prediction 17 31 - -
Cca08g00042 375 MobiDBLite consensus disorder prediction 1 16 - -
Cca08g00042 375 CDD AdoMet_MTases 96 196 - -
Cca08g00042 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 60 374 IPR029063 -
Cca08g00042 375 Pfam Ribosomal protein L11 methyltransferase (PrmA) 90 166 - -
Cca08g00042 375 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 33 375 IPR025799 GO:0016274|GO:0018216
Cca08g00042 375 Gene3D Vaccinia Virus protein VP39 45 197 IPR029063 -
Cca08g00042 375 Gene3D - 199 375 - -
Cca08g00042 375 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 54 355 IPR025799 GO:0016274|GO:0018216
Cca08g00042 375 MobiDBLite consensus disorder prediction 1 44 - -
Cca08g00042 375 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1.2-RELATED 33 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00042 Cca-Chr8 637107 640223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00042 57 338 C2H2 Transcription Factor Family AT3G12270 40.132 9.29e-66 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00042 K11434 - gmx:100781777 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00042 08 637107 640223 Cca08g00042 08 637107 640223 ECH