Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00036 ATGATGTACATGAGCAAGCAATGCTTTTTTGTTGAACAGATGCAAAGCAAGGAAGATGCCCTGCGAACAGAAGCCCAGCTGCTCAATACATTTGATTATGCATGGAACACAAGCAATAATGGTACCCGGAGGCCTGATGATATTCTTCAAAACCTCCATAAAATTGCTTCAGGCACTAGAACACTTTCAGATGTGGCCAGAGCGCTTTTACCTTTCACTCAGAAGCAAGTGGGTATCAAAATTAAATCAAGCAAGCTGCCTCTGGCAGATGACAAATCAGATGAAGCAGACAATGGCAGCTATAATTTCCTACCTCGAGTATTTAACTTTAACAGATCACGTCCTAGGATACTTCAGGATACCACTGGCATCGCTCGAGAACACGAGAATGCTAAAATTTGTGGAGTGGCCTTGGGTGATGGTTCAATTTGTAGAAGACCACCAGTTGAGAAAAGAATGAGGTGTCCTGAACACAAAGGAATGAGAACAAATGTGTCCACTTCCAAAGCAATCAGGGCACCCAAGTCAGAGAGCACTGTGGTATTAGAACCCAATGTGTATTCTCAAACAAATGGCAATGGATACAGACACCAAAATGCCAGCCAAGATGTAGAAGACCCTCAACAAACATCGGTTGGGAATCCTGTTGATGAAAGTCTCATAAGCACTAATATATGTGGAATCATCTTAAATGATGGCTCCACCTGCAGAAGACAACCAGTTAAAGGAAGAAAAAGGTGTCATGAGCACAAAGGGATGAGAATTCATGCATCGATTCAAACAAAGGGCAATGGATACAGATACCAAAATTACAGCCAAGATGTTGAAGTCCCTCCACAATCACAGGTTGGGAGTCCTTTTGATAATAGTGTCACAAACACCACTATATGTGGAATCATCTTGAATGATGGATCCACCTGTAGGAGACAACCAGTTAAAGGAAGAAAAAGATGCCATGAGCACAAAGGAAGGAGAATTCGTGCATCTTTTCATGTAAATCAGAAATAA 1008 0.4177 MMYMSKQCFFVEQMQSKEDALRTEAQLLNTFDYAWNTSNNGTRRPDDILQNLHKIASGTRTLSDVARALLPFTQKQVGIKIKSSKLPLADDKSDEADNGSYNFLPRVFNFNRSRPRILQDTTGIAREHENAKICGVALGDGSICRRPPVEKRMRCPEHKGMRTNVSTSKAIRAPKSESTVVLEPNVYSQTNGNGYRHQNASQDVEDPQQTSVGNPVDESLISTNICGIILNDGSTCRRQPVKGRKRCHEHKGMRIHASIQTKGNGYRYQNYSQDVEVPPQSQVGSPFDNSVTNTTICGIILNDGSTCRRQPVKGRKRCHEHKGRRIRASFHVNQK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00036 335 Pfam GIY-YIG domain-containing protein 9 49 - -
Cca08g00036 335 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 204 331 IPR038909 GO:0003677|GO:0006355
Cca08g00036 335 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 13 186 IPR038909 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00036 225 334 HRT Transcription Factor Family AT5G56780 42.478 2.27e-20 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Cca08g00036 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00036 - - lang:109350609 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00036 08 601696 604432 Cca08g00036 08 601696 604432 ECH