Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00035 ATGACAATACCCCAACCAAATCGATCTTCGTTCATGCCTTTGGCCATTCTATTTCAGGCATTATGCAAAGTTGAAATGAGGCAAAAGGATTGTTATAGAAAGAAAGGTTGGTGTAGTGCGAGTGGGAAAGTGGTGGTGGTTGCAGTTGAAGCTACGAAAGAAGTTCCAAGGACTGCTTTGGTGTGGGCATTGACTAATGTTGCTCAACCAGGGGATTGTATTAAGCTGCTGGGTGTCATTCCTTATTCAGACAACAGGATTCGCAGCCTCTGTAGGCTTGCTACTGATTGTATCACTAGTCAGAGGACATCCCGTTTAGGAACCGTCTCAGATCAGAGACAAGTTTGTGTAAATTCATGTTCCCAAATGGTGCTTCAACTTCATGAATTTTATGATCCAGAGAAGATAAAGATCAGAATAAAAATTATTTCTGGTTCTTTGTGTGGAGCTGTGGCTGCTGAAGCCAAGAGAGCCCAATCAAGCTGGGTAATATTAGACAAAAAATTGAAAAATGAAAAGAAATACTGCATGGAGGAGCTGAGTTGTAGTGTGGTAATCATAGAACGATCGCGGCCAAATGTTCTGCGATTGAATTTGATAAGTTCAAGAAACATGAAGCAGAATGCATTTCCAAGAAACATCAAAGAAAATTCTAAAAATGCAGATACAATTAGGGGTCCAGTTGTTAATATTCCTGCAGCTAGTAGTCTAAAACAAGGGTCAAACATGACAGAAAGTATCTTTGGACAAAGGAGAGGTTTCTCCTTCTCTCAAAAGGAGCTGAAAAATGTGGAGGAAGGTGAATCCAATTCACAGAGTGGAATTATTTTGAGTTTATCCTCCTCTAGTTCATATTTTCAGCCATGGACTTCAAATAAAATTTGTGTTGATGATGAGGCTTCGGTTTCTCAAGCCGAAGCATTGGTTCAGAAATTGGATCATGATGTTATCTTAGGAGTACTTAATTGTAAACTTGATGTGAACTTGAATAGAAGTGTTACAGAAACAATTTCACTAGTTCCAATTGCCACTACTGCGACCCCCCCATTGTGCTCTTTTTGTCAGCACAAGGCACCTTTGTTTGGGAACCCTCTAAGATGGTTTACATTTTCTGAACTGCAACTTGCCACTGATGGATTTTCACAGCCAAATCTTTTGGCTGAAGATGAGTTTGGTTCTGTACACCGTGGAGTGCTACCTGATGAGCAGGTTGTTGCAATCAAGAGGTATAACACTGGTGCTCGGGGTGATGAAGAATTTTTGTCAGAAATAGAGGTTTTAAGTTGTACACAACATCGTAATGTTGTGATGCTAATTGGGTTTTGTGTGGAGGATGGAAGAAAATTTCTGGTTTATGAATATGTCTGCAATGGATCTCTATATTCTCATCTTCATGGAAAAAATCAAAATGTATTGAATTGGCATGCACGTCAAAAAATTGCACTAGGAGCAGCTCGTGGTTTGAGGTACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGCGACGTGAGGCCTAGCAATATTCTCCTTACTCATGACTTCGAGGCATTAGTGGGAAATTTTGGGCTTGCCAGGTGGCATACGAATCGAGAAATGGATGTGGAAAGCAGGGTGCCAGGAACACTTGGGTATTTGGCTCCAGAATGCACTCAAAGTGGTCAAATCACTAAAGAAGCTGATGTTTTCTTCTTTGGGGTACTATTACTAGAGCTTGTTACTGGACGTAAAGCTTTAGATAAAAGCAGACCCAAAGGCCAGCAATGCCTCCATGAATGGGCACGTCCATTGCTTGAGAGACATGAAATTGATGAAATAATAGATCCAAGTATAAGAAACTGTGACATTGATCAGGTTCATCGCATGCTGCAATGTTCCTCGTTGTGCATACAACAAGATCCACATTTAAGGCCACGAATGTCTCTGGTTCTCCAGGTGTTAGAAGGCTACACTTCGACGTGA 1965 0.4102 MTIPQPNRSSFMPLAILFQALCKVEMRQKDCYRKKGWCSASGKVVVVAVEATKEVPRTALVWALTNVAQPGDCIKLLGVIPYSDNRIRSLCRLATDCITSQRTSRLGTVSDQRQVCVNSCSQMVLQLHEFYDPEKIKIRIKIISGSLCGAVAAEAKRAQSSWVILDKKLKNEKKYCMEELSCSVVIIERSRPNVLRLNLISSRNMKQNAFPRNIKENSKNADTIRGPVVNIPAASSLKQGSNMTESIFGQRRGFSFSQKELKNVEEGESNSQSGIILSLSSSSSYFQPWTSNKICVDDEASVSQAEALVQKLDHDVILGVLNCKLDVNLNRSVTETISLVPIATTATPPLCSFCQHKAPLFGNPLRWFTFSELQLATDGFSQPNLLAEDEFGSVHRGVLPDEQVVAIKRYNTGARGDEEFLSEIEVLSCTQHRNVVMLIGFCVEDGRKFLVYEYVCNGSLYSHLHGKNQNVLNWHARQKIALGAARGLRYLHEECRVGCIVHRDVRPSNILLTHDFEALVGNFGLARWHTNREMDVESRVPGTLGYLAPECTQSGQITKEADVFFFGVLLLELVTGRKALDKSRPKGQQCLHEWARPLLERHEIDEIIDPSIRNCDIDQVHRMLQCSSLCIQQDPHLRPRMSLVLQVLEGYTST 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00035 654 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 264 650 - -
Cca08g00035 654 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 40 211 - -
Cca08g00035 654 SMART tyrkin_6 380 648 IPR020635 GO:0004713|GO:0006468
Cca08g00035 654 Gene3D Phosphorylase Kinase; domain 1 350 454 - -
Cca08g00035 654 SUPERFAMILY Protein kinase-like (PK-like) 361 649 IPR011009 -
Cca08g00035 654 PANTHER OS01G0253100 PROTEIN 264 650 IPR045271 GO:0004714|GO:0006468
Cca08g00035 654 Gene3D Transferase(Phosphotransferase) domain 1 455 653 - -
Cca08g00035 654 PANTHER OS01G0253100 PROTEIN 40 211 IPR045271 GO:0004714|GO:0006468
Cca08g00035 654 CDD STKc_IRAK 386 650 - -
Cca08g00035 654 ProSitePatterns Tyrosine protein kinases specific active-site signature. 500 512 IPR008266 GO:0004672|GO:0006468
Cca08g00035 654 Pfam Protein tyrosine and serine/threonine kinase 385 646 IPR001245 GO:0004672|GO:0006468
Cca08g00035 654 ProSiteProfiles Protein kinase domain profile. 380 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00035 Cca-Chr8 592060 596875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00035 355 644 Trihelix Transcription Factor Family AT1G68690 46.622 3.08e-84 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca08g00035 PK_Tyr_Ser-Thr 8.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00035 - - vun:114182477 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00035 08 592060 596875 Cca08g00035 08 592060 596875 ECH