Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00032 ATGAGGAAGTTCAGTCTTTGTTGTTGTAGATTTGTTATCTACGAAAGTATGCAGCAACTTTTGTTAACTTTTGCTGGGAAAATTTTGATTCTTGTTAAAAGAGTACCATGGACAGAAGAAGAGCACCGAACATTCCTTGTTGGCCTTGAGAAGCTGGGAAAAGGTGACTGGAGGGGAATCTCTAGAAACTATGTGACTACAAGAACTCCAACACAAGTGGCTAGCCATGCTCAGAAGTACTTTATTCGGCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGCTGGTTTTAGCAACACAAATCAAATTAACAGCTCTAACTGCAAATCAGGTGATTTAGTTTCTACAAAATCCAAATGTGAAACTCATGAGAACGATGTCACCTTGTCACTTCTTCAACTAGAAACCAAATCAGATGAGAAGAAAGACAATGATAATTATTGTCAAGCTCAACCAACTGCAGAACATGCGATGTGGCTTCATTCTCAGGTGAAATCTTCGAATAATAATGCAGCAGTTGTTCCTGATCTGGAACTCACTCTTGCAGTGTCCAAAGGCAAGAATAAGGCCCTGGAACAAACTAAATCATCCCCAGATTCCTTCCTTCTTGGCCCAATTAGCGTGACTTGA 645 0.3984 MRKFSLCCCRFVIYESMQQLLLTFAGKILILVKRVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATMNKKKRRSSLFDLAGFSNTNQINSSNCKSGDLVSTKSKCETHENDVTLSLLQLETKSDEKKDNDNYCQAQPTAEHAMWLHSQVKSSNNNAAVVPDLELTLAVSKGKNKALEQTKSSPDSFLLGPISVT 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00032 214 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Cca08g00032 214 Gene3D - 35 87 - -
Cca08g00032 214 ProSiteProfiles SANT domain profile. 37 85 IPR017884 -
Cca08g00032 214 CDD SANT 36 81 IPR001005 -
Cca08g00032 214 SUPERFAMILY Homeodomain-like 33 85 IPR009057 -
Cca08g00032 214 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 33 214 - -
Cca08g00032 214 SMART sant 33 83 IPR001005 -
Cca08g00032 214 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 83 IPR006447 GO:0003677
Cca08g00032 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 85 IPR017930 -
Cca08g00032 214 ProSiteProfiles Myb-like domain profile. 33 81 IPR001005 -
Cca08g00032 214 PANTHER TRANSCRIPTION FACTOR KUA1 33 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00032 Cca-Chr8 571705 573697 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca08g00032 Myb_DNA-binding 5.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00032 - - gmx:778053 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00032 08 571705 573697 Cca08g00032 08 571705 573697 ECH