Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00021 ATGAACGTGTTCACTAAAAAACAACACCGTTTTTGTTGTTTTTTCACACACCGCCTCAGATTCTTGCCTCGTTTTGTAGCCTTCCATTTCCACCCCTTCTTTCTTCAACTTTGTTATTTCCTCATCCTTTCTATGCTTGGTTACTTCTCTCTCAAGCTCTCAAAGCCAAGGACCCGTGTTAGACCAAATGACTTGGACCTCTTTTTCACATCTGTTTCTGCTTCCACAGTTTCTAGCATGGTTGCCGTTGAGATGGAGGTTTTCTCCAATTCTCAACTCATTCTCCTCACCCTTCTCATGTTTCTTGGCGGGGAAGTTTTCACTTCCATGCTAGACCTTGTACTTGCTAGGTATAAAGTTACCACCAATCCTTTTTCACCCACAAGCAAGACCGGTACCCCATTTAAAGCCAACCAAGTTGAGCTTGGTTTAGTAACTATTCCTCATTCAGAATCAGAAAACCACAAACCAAGTGATAGTGATAAACTTAAGTATAACTCTCTTATTTATCTTACTTTTGTGGTTTTAGGTTACCTTATAGTGGTTCAATTTGTTGGCTTTAGTTTGGTATCTTTGTACATAAGTTTGGTACCAAGTGCAAGACAAGTACTGAAAAACAAAGGCATTAAGATTGTAACATTTTCTTTGTTTACCATAGTCTCCACTTTTGCTAGTTGTGGTTTTATCCCCACCAACGAGAACATGATGGTTTTCAAGAACAATTCGGGGCTTCTCCTCCTTCTCCTCCCACACGTCCTTCTAGGTAACACCCTTTACCCACCGTGTTTGAGGCTTGTGATAATGCTTCTGAAAAAGGTTACCAGAAGAGAAGAGTATTCGTACTTGCTCAAGAATTTCAAAGACATGGGGTATGATCATATGCTCTCTGCTCTTCATTGTTGCCTCCTGGTAGCTACTGTCTTGGGTTTGAATGTTGTACAATTTGTGATGCTGTGCTCCATGGAGTGGAACTCCAACATCATGGAGGGTTTGAATGTGTATCAGAAACTGGTTGCGTCGTTATTTCAAGTTACTAACGCCAGACACTCTGGTGAATCTGTTTTTGATCTCTCTTCCATCTCTTCAGCCATATTGGTACTCTTCATTGTCATGATGTACCTGCCACCATACACAACATATTTACCTGTAAATAGAGAGAAGGAAAATGATGTGAAGAGAAAGGAAAAAAGCATAGTGGAGTGTGTTGTAATGTCCCAACTCTCATACTTGGTTATTTTCATTATTTTGATTTGCATAACTGAGAGCAAAAGCTTAAAAGAGGATCCCCTCAACTTTAATGTCTTGAACATCACCCTAGAAGTCATCAGTGCTTATGGGAATGTGGGGTTCTCAACGGGATATAGCTGCGCAAGGCAATTGAAACCAAATGGTATGTGCAAAGATTCATGGGTTGGATTTTCCGGTAGATGGAGTAACAAAGGCAAGTTCATCCTTATCTTGGTCATGTTCTTTGGGAGGCTCAAGAAATTCAACATGAAAGGTGGCAAAGCATGGAATCTCTCATAG 1527 0.4054 MNVFTKKQHRFCCFFTHRLRFLPRFVAFHFHPFFLQLCYFLILSMLGYFSLKLSKPRTRVRPNDLDLFFTSVSASTVSSMVAVEMEVFSNSQLILLTLLMFLGGEVFTSMLDLVLARYKVTTNPFSPTSKTGTPFKANQVELGLVTIPHSESENHKPSDSDKLKYNSLIYLTFVVLGYLIVVQFVGFSLVSLYISLVPSARQVLKNKGIKIVTFSLFTIVSTFASCGFIPTNENMMVFKNNSGLLLLLLPHVLLGNTLYPPCLRLVIMLLKKVTRREEYSYLLKNFKDMGYDHMLSALHCCLLVATVLGLNVVQFVMLCSMEWNSNIMEGLNVYQKLVASLFQVTNARHSGESVFDLSSISSAILVLFIVMMYLPPYTTYLPVNREKENDVKRKEKSIVECVVMSQLSYLVIFIILICITESKSLKEDPLNFNVLNITLEVISAYGNVGFSTGYSCARQLKPNGMCKDSWVGFSGRWSNKGKFILILVMFFGRLKKFNMKGGKAWNLS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00021 508 Pfam Cation transport protein 159 374 IPR003445 GO:0006812|GO:0008324|GO:0055085
Cca08g00021 508 Pfam Cation transport protein 386 460 IPR003445 GO:0006812|GO:0008324|GO:0055085
Cca08g00021 508 PANTHER SODIUM TRANSPORTER HKT1 15 508 - -
Cca08g00021 508 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 15 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00021 Cca-Chr8 488859 493321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00021 52 507 Inorganic Solute Cotransporters AT4G10310 51.724 3.95e-160 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00021 K24976 - gmx:100797835 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00021 08 488859 493321 Cca08g00021 08 488859 493321 ECH