Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00020 ATGAACAGTTTTACAAGTTTCGCTAAAAGACAACATCGTTTTTGTAGTGTTTTCTTAAACAACCTTGGATTCTTGGCCTGTTTTGTGGCCCTCAATTTCCACCCCTTCTTTCTTCAACTTTTTTATTTCCTCATCCTTTCTCTGCTTGGTTACCTCGGTCTCAAGGTCTCAAAGCCAAGGACCCATGTTAGACCAAATGACTTGGATCTAGTTTACACCTCCGTTTCTGCTTCCACTGCTTCTAGCATGGTTGCCCTAGAAATGGAGATTTTCTCCAACTCCCAACTCATTCTCCTCACCCTTCTCATGTTTCTTGGTGGGGAAGTTTTCACTTCCATGCTCGACCTTTTACTTGCTAGGTATAAATTCACCCACATGAGTGTCCTAAACAGATCTAGTGCTAGCATCAATCCTTTTTCACCCACAAATGAGTCCCCAGTCAATGCCGATCGAGTTGAGCTTGGTTTAGTGTCTATTCCCCGCTCAGAATCAGAAGACCACCAACCAAGTCATAGTAATTATATTAACGTTTCAAATGATAGACTTAAGAATAAATGTCTTGGTTATCTCACTTTGGTGGTTTTAGGTTACCTTTTGCTGGTTCAATTTGTTGGATTTAGTTTGGTGTCTGTGTACATAACTTCGGTACCTAGTGCTAGACAAGTACTAAAAAACAAAGGCATTAAAATTGCAACATTTTCTTTGTTTACCGTAGTCTCCACTTTTGCTAGTTGTGGTTTTGTCCCCACCAACGAGAACATGATAATTTTCAAGAACAATTCGGGGCTTCTCCTCCTTATCCTCCCACATGTCTTTCTAGGTAACACCCTTTACCCACCGTGTTTGAGGCTTGTGATAATGCTTCTCAAAAAGGTTTCTAAAAGAGAGGAATTCTCATACTTGCTCAAGAATTCCAAGGACATGCATTTGCTCCCTGCTGTTCATTGCTGCCTCCTGGTTGCAACTGTCTTGGGTTTGAATCTCATACAATTTGTCATGTTCTGCTCCATCGAATGGAACTCCAAAATCATGGAGGGTTCCAATGTGTATCAGAAACTGGTTGCGTCAATATTTCAAGTTACAAACACCAGACACGCTGGTGAATCTGTTTTTGATCTCTCTTCAATGTCTTCAGCCATATTGCTACTATTCATTGTCATGATGTACCTGCCACCATACACAACATATTTACCTGTAAATAGAGAGAAGGAAAATGATGTGAAGAGAAAGGAAAAAAGCATAGTGGAGTGTGTTGTAATGTCCCAACTCTCATACTTGGTTATTTTCATTATTTTGATTTGCATAACTGAGAGCAAAAGCTTAAAAGAGGATCCCCTCAACTTTAATGTCTTGAACATCACCCTAGAAGTCATCAGGCAAGTAAATATTTATTTTACATTCAATTCTGCTTATGGGAATGTGGGGTTCTCAACGGGATATAGCTGCGCAAGGCAATTGAAACCAAATGGTATGTGCAAAGATTCATGGGTTGGATTTTCCGGTAGATGGAGTAACAAAGGCAAGTTCATCCTTATCTTGGTCATGTTCTTTGGGAGGCTCAAGAAATTCAACATGAAAGGTGGCAAAGCATGGAATCTCTCGTGGCATATGTAA 1614 0.4015 MNSFTSFAKRQHRFCSVFLNNLGFLACFVALNFHPFFLQLFYFLILSLLGYLGLKVSKPRTHVRPNDLDLVYTSVSASTASSMVALEMEIFSNSQLILLTLLMFLGGEVFTSMLDLLLARYKFTHMSVLNRSSASINPFSPTNESPVNADRVELGLVSIPRSESEDHQPSHSNYINVSNDRLKNKCLGYLTLVVLGYLLLVQFVGFSLVSVYITSVPSARQVLKNKGIKIATFSLFTVVSTFASCGFVPTNENMIIFKNNSGLLLLILPHVFLGNTLYPPCLRLVIMLLKKVSKREEFSYLLKNSKDMHLLPAVHCCLLVATVLGLNLIQFVMFCSIEWNSKIMEGSNVYQKLVASIFQVTNTRHAGESVFDLSSMSSAILLLFIVMMYLPPYTTYLPVNREKENDVKRKEKSIVECVVMSQLSYLVIFIILICITESKSLKEDPLNFNVLNITLEVIRQVNIYFTFNSAYGNVGFSTGYSCARQLKPNGMCKDSWVGFSGRWSNKGKFILILVMFFGRLKKFNMKGGKAWNLSWHM 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00020 537 PANTHER SODIUM TRANSPORTER HKT1 2 534 - -
Cca08g00020 537 Pfam Cation transport protein 190 390 IPR003445 GO:0006812|GO:0008324|GO:0055085
Cca08g00020 537 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 2 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00020 Cca-Chr8 473705 477097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00020 55 533 Inorganic Solute Cotransporters AT4G10310 48.682 1.72e-149 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00020 K24976 - gmx:100797835 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00020 08 473705 477097 Cca08g00020 08 473705 477097 ECH