Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00016 ATGACTCTTCAACCTGTGCCTTCCGTTGACAAGGACGCTCTTTTGAGATCAGATCTCGCTCTCAAGTCCACCAAGCCCCAACCCGACTTCTTCTGCAAGCAACTCACCGCCAGCGACACCAGCACTCACGGCGGCTTCTCCGTCCCCCGTCGCGCCGCCGAGAAGATTTTCCCTCCTCTCGATTATTCTATGCAACCTCCTGCTCAAGAACTCGTCGCTAGGGATTTGCACGACACCGTTTGGACATTCCGCCACATATACCGTGGACAACCAAAGCGTCACTTGCTGACCACTGGATGGAGTCTCTTTGTCAGTGGAAAGAGGCTTTTTGCTGGAGACTCTGTTTTATTTATTAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCGCCAACATATCATCGTCGGTGCTATCAAGTGATAGTATGCACATTGGAGTTCTTGCTGCAGCGGCTCATGCAGCTGCAAACAATAGCCCCTTCACCGTCTTTTATAATCCTAGGTCTAGTCCATCGGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCTGTGTACAGCCACCAGCCGTCACTTGGCATGCGATTCCGAATGATGTTTGAAACTGAGGACTCCGGAACAAGAAGGTATATGGGTACAATTACAGGTATCAGTGACCTGGATCCTGTGCGATGGAAAAACTCTCAATGGCGTAGTTTGCAGGTTGGCTGGGATGAGTCAACTGCTGGAGAGAAGCGTAGCAGGGTCTCAATCTGGGAAATCGAACCAGTGACTGCTCCATTTTTCATCTGTCCACCTCCATTCTTTAGATCCAAGAGGCCAAGACAGCCTGGAATGCCTGATGATGAATTATCTGATTTTGATAATATTTTCAAGCGGACAATTCCTTGGATTGGGGATGATATGTGCATGAAGGATTCCCAAGGTCTCCCTGGCCTGAGCTTAGCTCAATGGATGAACATGCAGCACAATCCTGCAATGGCCAGCTCGTTGCAGCCAAATTATGTACCTTCCTTAACGGGATCTATTTTGCAAAATATCCCTGGAGCTGATATTTCTCGTCAACTGGGATTTTCTGCTCCTCAGATTTCTCAGTCAAACAATGTAGCCTTCAATACTCAGAGGCTACTTCAGACTGCTCAACAACTGGATCACCTTCAGAAGCTACCATCTACTTCCAGCGCGTTGGGAACAGTCATGCCGCCGCAGCAACAGTTGGGTGATATCACTCAACAACCGAGGCAGAAGTCGGCAAATCAAACTATCCCCCAGAGTCAAGTTCAGGCCCAACTCTTGCATCCCCAGAACATTGTACAAAGCAACAATATTCTTCAACAGCCGCAACCATCCATTCAAAACCATCAACTCCATAGAAGCCTCTCTCAGAACCCATCACAGCAGCAGCAACAGACAATTATAGGTCAGAATCAACAACAAAATTTGATCCAGTCCCCTGTACCTGATCATGTTCAACAATTACAAATGTCCGACAATCAGATTCAGCTGCAGTTGTTACAGAAGCTTCAACAACAAAAGCAAACACTCTTGGCACAGCAAACTGCACTGCAGCAGCCTGCTCAATTTAGTCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAAACACATAACTTGTCTAGAGCACTAGCACCTGGTCAAGTACTGGAAATCCCTACTATACTTCAGAATTCACTCCCTGAGGCTAATTCTATCTCAAATCAGATGACCAAGGCTAATTGTCAGAACAATATTCAATACTCTCAGCAGCCCAAGCTTCAACAGCAGCAGCCTGGCTTGCTTTCTGAAATGTCTGGCCACGTGGCTCTTCTCCCTACCCCTACAACTAACCAACTTTCTACTGCTGGCAGTAGTATACTGACTGGAGCAGCTGGTGCAGGTCAATCTGTAATTACTGATGATGTTCCATCTTGCTCCACCTCACCTTCTACAAATAACTGTGCCACTGCACTTCAACCATTGATAAATTCCCGATTCCAGAGAAGCACAATAGTAGGGGATGACATGGCTCAGTCCACTGCCACACTCTTGAGTTCTAGTGCCTTAGAGACTATTTCATCAAATGCAAACCTGTTGAAAGATTTACAGCCCAAGTCAGAAGTTAAGCCTTCGCTGAATATTTCTAAAATCCAGAATCAAGGGCATTTTGGTCCTCAGACATACTTGAATGTTAGTGCTGCCCATACAGATTGTTTGGATACATCATCTTCTACGACATCAGTTTGCCTTTCTCAGAGTGATGCTCATATGCATCAGAATAACAACCCATTATCTTACAATCCGCAGACAATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCTGATCCTAGGAGCAATATTCCATATGCCAATAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGACTCCCTTTTAACCAAAAGCACATTGGGGTTGGGGAAAGATTTGTCTAATAATTTCTCTTCAGAAGACATGCTTGGTAATTATGAAAATAACAGAGATACTCGGCAGGAACTTTCGTCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGACCTTCAATTCAATTGATTCCACAATAGACCATAGTAACTTCTTGAATAGAGGTGCTTGGGCTccaccaccagcaccgccaccaccacctctgccaccagcacAGTTTCAGCGGATGAGGACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAGCACGGTATTCAGGTTATGAGGAGCTTAAACAGGATTTAGCTCGTAGGTTTGGCATAGAGGGACAGCTGGAGGATCGGCAAAGGATAGGCTGGAAACTTGTCTATGTAGATCATGAGAATGATGTTCTACTAGTGGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGTATAAAAATACTCTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGCCAATGGTGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATACTTGA 3048 0.4469 MTLQPVPSVDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANISSSVLSSDSMHIGVLAAAAHAAANNSPFTVFYNPRSSPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRSLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDELSDFDNIFKRTIPWIGDDMCMKDSQGLPGLSLAQWMNMQHNPAMASSLQPNYVPSLTGSILQNIPGADISRQLGFSAPQISQSNNVAFNTQRLLQTAQQLDHLQKLPSTSSALGTVMPPQQQLGDITQQPRQKSANQTIPQSQVQAQLLHPQNIVQSNNILQQPQPSIQNHQLHRSLSQNPSQQQQQTIIGQNQQQNLIQSPVPDHVQQLQMSDNQIQLQLLQKLQQQKQTLLAQQTALQQPAQFSQIQDQQRQILDKTHNLSRALAPGQVLEIPTILQNSLPEANSISNQMTKANCQNNIQYSQQPKLQQQQPGLLSEMSGHVALLPTPTTNQLSTAGSSILTGAAGAGQSVITDDVPSCSTSPSTNNCATALQPLINSRFQRSTIVGDDMAQSTATLLSSSALETISSNANLLKDLQPKSEVKPSLNISKIQNQGHFGPQTYLNVSAAHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLSYNPQTMLFRDNSQDGEVQADPRSNIPYANNIDSQMGMPLNPDSLLTKSTLGLGKDLSNNFSSEDMLGNYENNRDTRQELSSSMVSQTFGVPDMTFNSIDSTIDHSNFLNRGAWAPPPAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDIARYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFANGGLPNQACSSSDGGNT 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00016 1015 MobiDBLite consensus disorder prediction 456 483 - -
Cca08g00016 1015 Coils Coil 504 524 - -
Cca08g00016 1015 ProSiteProfiles B3 DNA-binding domain profile. 31 133 IPR003340 GO:0003677
Cca08g00016 1015 PANTHER AUXIN RESPONSE FACTOR 1 1009 - -
Cca08g00016 1015 SUPERFAMILY DNA-binding pseudobarrel domain 21 160 IPR015300 -
Cca08g00016 1015 Pfam B3 DNA binding domain 31 132 IPR003340 GO:0003677
Cca08g00016 1015 Gene3D - 195 266 - -
Cca08g00016 1015 CDD B3_DNA 30 122 IPR003340 GO:0003677
Cca08g00016 1015 Pfam Auxin response factor 157 240 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca08g00016 1015 Gene3D - 29 132 IPR015300 -
Cca08g00016 1015 MobiDBLite consensus disorder prediction 413 432 - -
Cca08g00016 1015 Pfam AUX/IAA family 902 988 IPR033389 -
Cca08g00016 1015 SUPERFAMILY CAD & PB1 domains 920 981 - -
Cca08g00016 1015 Gene3D - 898 992 - -
Cca08g00016 1015 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1009 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca08g00016 1015 SMART B3_2 31 133 IPR003340 GO:0003677
Cca08g00016 1015 ProSiteProfiles PB1 domain profile. 903 987 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00016 Cca-Chr8 427200 433588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00016 1 374 B3 DNA Binding Superfamily AT1G19220 71.618 6.28e-176 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca08g00016 B3 3.3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00016 - - ccaj:109803454 1894.01