Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00013 ATGCCCTTCTGGAGGGCGTGCGTGTGCCAACCCTGCCCCTTCACTATGGCACTCCTCACTTCCTTAACTTCATTCACATTCACATCTCTTTTATTCATCCTCTCTTCATCATACGCTTCAGACACAGATTCCATCCTCAAATTCAAGGACTCCCTCGAAGACAACAATGCATTATCCTCATGGAATGCATCCACCCCTCCTTGTTCAGATAGTTCTGCCAATTGGCCTTACATTCAGTGCTATAAGGGAAACATATGGGGGTTGAAGCTCGAGAACATGAGGCTCAAGGGGGATATTGACGTCCACTCCCTCGAGGAGTTACCCTTTCTCAGAACATTAAGCCTCATGAACAATGACTTTGAAATCACGTGGCCTGATCTCAACAAGCTAGTGGGTTTGAAGACCCTTTACCTCTCAAATAACAAGTTCTCCGGGGAGGTTCCTTCTCAGGCTTTTCAGGATATGAAATGGTTGAAGAAAATTCATTTGTCCAACAACCAGTTTATAGGTTCTATTCCAATTTCCCTCTCATCCATACCTAGGCTCATGGAGTTGAGGTTGGATGGAAACCAATTCACCGGCACCATTCCTGATTTTCATCATCAATTGAAATCATTTAGCGTAGCTAATAATCAATTAGAGGGAGAAATACCAGCCATCCTAAGTAACATGCCCGTTTCATCTTTCTCTGGTAATGAAGGGCTATGTGGGGCACCGTTAGATAAATGCCCCACCAAAAAGAAATCAATTACGAGTATTGTTGTGGCTGTGGTTCTTGTTATTTTGGCACTGATTGTGATTGGAGCAGTAATATTGCTTGTCCTCCGAAGAAGAAAACAAATGCCAGAAGTGCCTTCAGAGAATCCACCAACATCCGAAAAGAAATCAGGAAGTAGGGAACTGTCGGATGAAGGAAGTCACAGGTCGTGTGTCTCTAGCCGCAGCAGCAGAAAAGTAGACAGCATGAGGTTATCGTTTGTGAGGGATGACAGAGAGCAGTTTGATTTGCAAGAACTGCTTCGAGCCTCTGCTGAGATATTGGGCAGTGGTGTTTACAGCTCTTCCTACAAGGCTGCTCTCTTAAATGGGCCAGTCATGGTGGTCAAGAGATTCAAGCAAATGAACAATGTAGGGAGGCAAGAGTTTCAGGAGCACATGCGACGGATAGGAAGGTTGAATCACCCTAATCTGCTTCCTCTCGTCGCCTTCTACTACAGAAAGGAGGAGAAACTCTTGGTTACCGACTACGTTTACAATGGCAGCTTGGCTGTTCGCCTTCACGGATACCAAGCTCTAGGGCAACCAAGCCTTGATTGGGGAAGCCGGTTGAAGATAGTGAAAGGCGTAGCAAAAGGGCTTGATTATCTGTACAAGGAGATGCCAAGACTAATTGCACCCCATGGACATCTCAAGTCCTCCAACGTTCTTCTGAGTGAATCTTTGGATCCCATCCTCACAGACTACGGGTTGGTACCAGTCATAAACCAGGATCTTGCTCCTGACATCATGGTGATCTACAAATCCCCTGAGTATTTGCAGCATGGCCGTGTTACAAAGAAGACTGATGTGTGGGGTTTTGGAATACTCATTTTGGAGATTCTCACTGGCAACTTCCCTGCTAACTTGCAACAAGGGAGGGGAAGTGAGTTGAGTTTGGCAAATTGGGTGAATTCGGTTGTCCCTGAAGAGTGGAGTAGTGAGGTGTTTGATAGGGACATGGAAGCAACCAAAAGCAGTGAAGGGCAGAAGGTGAAGCTTTTGAAGATTGCATTGGCTTGTTGTGAGACTGATGTGGACAAGAGATGTGACATTAAAGAAGCTGTAGAAAGAACTCTAGAGGTAAAGGAAATAGATAACGAGGAGGAAGATTCATATTCTTCTAATGCTAGTGAAGCTGACAACAAGTCTTCAAAGGCTTCGTCAGGTGAAGTCAGTTTCTCCATAGATGGTTGA 1953 0.4516 MPFWRACVCQPCPFTMALLTSLTSFTFTSLLFILSSSYASDTDSILKFKDSLEDNNALSSWNASTPPCSDSSANWPYIQCYKGNIWGLKLENMRLKGDIDVHSLEELPFLRTLSLMNNDFEITWPDLNKLVGLKTLYLSNNKFSGEVPSQAFQDMKWLKKIHLSNNQFIGSIPISLSSIPRLMELRLDGNQFTGTIPDFHHQLKSFSVANNQLEGEIPAILSNMPVSSFSGNEGLCGAPLDKCPTKKKSITSIVVAVVLVILALIVIGAVILLVLRRRKQMPEVPSENPPTSEKKSGSRELSDEGSHRSCVSSRSSRKVDSMRLSFVRDDREQFDLQELLRASAEILGSGVYSSSYKAALLNGPVMVVKRFKQMNNVGRQEFQEHMRRIGRLNHPNLLPLVAFYYRKEEKLLVTDYVYNGSLAVRLHGYQALGQPSLDWGSRLKIVKGVAKGLDYLYKEMPRLIAPHGHLKSSNVLLSESLDPILTDYGLVPVINQDLAPDIMVIYKSPEYLQHGRVTKKTDVWGFGILILEILTGNFPANLQQGRGSELSLANWVNSVVPEEWSSEVFDRDMEATKSSEGQKVKLLKIALACCETDVDKRCDIKEAVERTLEVKEIDNEEEDSYSSNASEADNKSSKASSGEVSFSIDG 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00013 650 ProSiteProfiles Protein kinase domain profile. 341 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00013 650 SUPERFAMILY L domain-like 39 239 - -
Cca08g00013 650 MobiDBLite consensus disorder prediction 629 650 - -
Cca08g00013 650 Gene3D Ribonuclease Inhibitor 202 243 IPR032675 -
Cca08g00013 650 PANTHER LRR RECEPTOR-LIKE KINASE 24 626 - -
Cca08g00013 650 Pfam Leucine rich repeat 132 192 IPR001611 GO:0005515
Cca08g00013 650 MobiDBLite consensus disorder prediction 293 314 - -
Cca08g00013 650 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Cca08g00013 650 Gene3D Phosphorylase Kinase; domain 1 306 416 - -
Cca08g00013 650 MobiDBLite consensus disorder prediction 615 650 - -
Cca08g00013 650 Pfam Protein kinase domain 344 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00013 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 626 - -
Cca08g00013 650 Gene3D Transferase(Phosphotransferase) domain 1 418 640 - -
Cca08g00013 650 SUPERFAMILY Protein kinase-like (PK-like) 345 611 IPR011009 -
Cca08g00013 650 Pfam Leucine rich repeat N-terminal domain 40 80 IPR013210 -
Cca08g00013 650 MobiDBLite consensus disorder prediction 282 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00013 Cca-Chr8 408905 412014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00013 30 647 Receptor kinase-like Gene Family AT5G35390 51.852 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca08g00013 Pkinase 9.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00013 - - ccaj:109803310 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02557 09 51136492 51140420 Cca08g00013 08 408905 412014 PCT