Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca07g02557 | ATGGAGAAGGTGCTTAGATTGCCTCCGGGGTTCCGTTTCCACCCGACGGATGAGGAACTTGTGGTCCAATACTTGAAGCGTAAGGTCTTCTCCTGCCCTTTGCCAGCCTCCATCATTCCAGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCTGGTGAGTTGGAACAAGAGAGGTACTTCTTCAGCACCAAAGAGGCCAAATATCCCAACGGGAATCGCTCCAACAGAGCCACCAATTCAGGTTATTGGAAGGCAACTGGGTTGGACAAGCAAATTGTAACCAACCAAGTTGTGGGGATGAAGAAGACGCTTGTTTTCTACAGAGGCAAGCCACCTCATGGCTCCAGAACTGATTGGATCATGCATGAATATCGCCTCCTCAACATCAACAATTCCTCCCCCTCCTCTAAGAGCCCTTTGGAAAATTGGGTTCTATGTAGGATATTTTTGAAGAGGAGAAGTGGTGCTAAAAGCCTTGATAACATCCGCAAGGTGAAGAACTCAAAGCTTGTTTTCTATGACTTCCTCGCACAGAACAAGACCGATTCCTCCTCCTCCAGTGGAATTACAGAGCTTTCAGATCATGAACACGAAGAGAGTAGTAGCTCCAACACCTTCCCTTACTTTAGAACAAAACAATCTTGA | 651 | 0.467 | MEKVLRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLPGELEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNINNSSPSSKSPLENWVLCRIFLKRRSGAKSLDNIRKVKNSKLVFYDFLAQNKTDSSSSSGITELSDHEHEESSSSNTFPYFRTKQS | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca07g02557 | 216 | Gene3D | NAC domain | 16 | 157 | IPR036093 | GO:0003677|GO:0006355 | |
Cca07g02557 | 216 | MobiDBLite | consensus disorder prediction | 182 | 216 | - | - | |
Cca07g02557 | 216 | PANTHER | NAC DOMAIN-CONTAINING PROTEIN 82-RELATED | 4 | 214 | - | - | |
Cca07g02557 | 216 | PANTHER | NAC DOMAIN-CONTAINING PROTEIN 83-LIKE | 4 | 214 | - | - | |
Cca07g02557 | 216 | Pfam | No apical meristem (NAM) protein | 8 | 128 | IPR003441 | GO:0003677|GO:0006355 | |
Cca07g02557 | 216 | ProSiteProfiles | NAC domain profile. | 7 | 153 | IPR003441 | GO:0003677|GO:0006355 | |
Cca07g02557 | 216 | SUPERFAMILY | NAC domain | 4 | 153 | IPR036093 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca07g02557 | Cca-Chr7 | 54645386 | 54646723 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca07g02557 | 4 | 208 | NAC Transcription Factor Family | AT5G13180 | 59.836 | 1.37e-92 | 270 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NAC | Cca07g02557 | NAM | 3.3e-36 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca07g02557 | - | - | gmx:100170709 | 350.903 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca07g02557 | 07 | 54645386 | 54646723 | Cca07g02557 | 07 | 54645386 | 54646723 | ECH | |
Cca07g02557 | 07 | 54645386 | 54646723 | Cca03g00293 | 03 | 4417713 | 4419722 | ECH | |
Cca07g02557 | 07 | 54645386 | 54646723 | Cca09g02375 | 09 | 49096328 | 49098704 | ECH |