Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02557 ATGGAGAAGGTGCTTAGATTGCCTCCGGGGTTCCGTTTCCACCCGACGGATGAGGAACTTGTGGTCCAATACTTGAAGCGTAAGGTCTTCTCCTGCCCTTTGCCAGCCTCCATCATTCCAGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCTGGTGAGTTGGAACAAGAGAGGTACTTCTTCAGCACCAAAGAGGCCAAATATCCCAACGGGAATCGCTCCAACAGAGCCACCAATTCAGGTTATTGGAAGGCAACTGGGTTGGACAAGCAAATTGTAACCAACCAAGTTGTGGGGATGAAGAAGACGCTTGTTTTCTACAGAGGCAAGCCACCTCATGGCTCCAGAACTGATTGGATCATGCATGAATATCGCCTCCTCAACATCAACAATTCCTCCCCCTCCTCTAAGAGCCCTTTGGAAAATTGGGTTCTATGTAGGATATTTTTGAAGAGGAGAAGTGGTGCTAAAAGCCTTGATAACATCCGCAAGGTGAAGAACTCAAAGCTTGTTTTCTATGACTTCCTCGCACAGAACAAGACCGATTCCTCCTCCTCCAGTGGAATTACAGAGCTTTCAGATCATGAACACGAAGAGAGTAGTAGCTCCAACACCTTCCCTTACTTTAGAACAAAACAATCTTGA 651 0.467 MEKVLRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLPGELEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNINNSSPSSKSPLENWVLCRIFLKRRSGAKSLDNIRKVKNSKLVFYDFLAQNKTDSSSSSGITELSDHEHEESSSSNTFPYFRTKQS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02557 216 Gene3D NAC domain 16 157 IPR036093 GO:0003677|GO:0006355
Cca07g02557 216 MobiDBLite consensus disorder prediction 182 216 - -
Cca07g02557 216 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 214 - -
Cca07g02557 216 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 4 214 - -
Cca07g02557 216 Pfam No apical meristem (NAM) protein 8 128 IPR003441 GO:0003677|GO:0006355
Cca07g02557 216 ProSiteProfiles NAC domain profile. 7 153 IPR003441 GO:0003677|GO:0006355
Cca07g02557 216 SUPERFAMILY NAC domain 4 153 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02557 Cca-Chr7 54645386 54646723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02557 4 208 NAC Transcription Factor Family AT5G13180 59.836 1.37e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca07g02557 NAM 3.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02557 - - gmx:100170709 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02557 07 54645386 54646723 Cca07g02557 07 54645386 54646723 ECH
Cca07g02557 07 54645386 54646723 Cca03g00293 03 4417713 4419722 ECH
Cca07g02557 07 54645386 54646723 Cca09g02375 09 49096328 49098704 ECH