Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02555 ATGGGTTGCTTCTCGTGTTTCGATTCGAGTTCCAAGGAGGATCACGGCGTTCCTCAACACCAACCTAATCCTTCTCGAATTTCCAGATTGCCCTCTGCCTCTGGAGCAGACAAGTTGCGTGGAGGTTCCAGTTCCAGAAGGGAAGTTGCTCCAAAGGATGGACATGTCCAAATTGCTGCTCAAACATTTACCTTCCGTGAACTTGCAGCTGCAACCAAAAACTTTAGGGCAGAGTCCTTTGTTGGGGAAGGTGGTTTTGGAAGGGTCTACAAAGGCAGGCTGGAAACCACTGCTCAGATTGTTGCTGTTAAACAGTTGGACAAAAATGGTCTTCAGGGTAATCGGGAATTCCTTGTCGAGGTCCTCATGCTCAGTCTTCTACATCACCCTAACCTTGTCAATCTCATTGGATACTGTGCGGATGGTGATCAACGCCTCCTTGTTTATGAATATATGCCTTTGGGATCATTGGAAGATCACCTTCATGATCTCCCCCCTGATAAGGAACCACTAGATTGGAACACTAGAATGAAAATAGCTGTTGGTGCTGCAAAAGGATTAGAATACCTGCATGATAAGGCAAATCCTCCTGTCATATATAGAGACTTCAAGTCATCTAACATATTACTTGATGAAGGATACAATCCAAAGCTTTCTGACTTTGGTCTTGCAAAGCTTGGTCCTGTTGGTGACAAATCACATGTTTCTACCCGCGTCATGGGAACTTATGGTTACTGTGCCCCCGAGTATGCTATGACTGGACAGCTGACTGTGAAATCTGATGTATACAGTTTTGGGGTTGTCTTCTTAGAGCTGATTACTGGCCGCAAAGCAATTGACAGCACCCAGCCTCAGGGAGAACAGAATCTTGTCACATGGGCACGGCCTCTTTTTAACGATCGGAGGAAGTTTTCAAAGTTGGCTGATCCCAGGCTCCAGGGGAGGTTTCCCATGCGGGGTCTTTATCAGGCTCTTGCTGTGGCATCAATGTGCATTCAAGAATCGGCTGCCACACGTCCTCTGATTGGAGACGTAGTGACAGCCCTCTCTTATCTGGCCAACCAAACATATGATCCCAACAATTCTGGGCATGGTTATAGGGGTTCTAGTGATGATAAGAGGAACAGAGATGATAAAGGTGGAAGAATATTGAAAAATGACGAAACTGGGGGATCCGGACGCAGATGGGACTTGGAAGGATCCGAGAAAGATGACTCCCCTCGAGAAACAGCAAGGATGTTAAACAGAGATCTAGATAGAGAGCGTGCTGTGGCCGAAGCCAAGATGTGGGGAGAGAACTTGAGACAACAAAGAAAACAAAGAGGGCAGCAGGGCAGTTTTGATGGTTCTAATGCTTAG 1359 0.4658 MGCFSCFDSSSKEDHGVPQHQPNPSRISRLPSASGADKLRGGSSSRREVAPKDGHVQIAAQTFTFRELAAATKNFRAESFVGEGGFGRVYKGRLETTAQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKEPLDWNTRMKIAVGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYNPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPQGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQTYDPNNSGHGYRGSSDDKRNRDDKGGRILKNDETGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENLRQQRKQRGQQGSFDGSNA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02555 452 MobiDBLite consensus disorder prediction 367 435 - -
Cca07g02555 452 Gene3D Transferase(Phosphotransferase) domain 1 152 367 - -
Cca07g02555 452 MobiDBLite consensus disorder prediction 16 30 - -
Cca07g02555 452 MobiDBLite consensus disorder prediction 436 452 - -
Cca07g02555 452 CDD STKc_IRAK 81 349 - -
Cca07g02555 452 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Cca07g02555 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cca07g02555 452 SUPERFAMILY Protein kinase-like (PK-like) 60 347 IPR011009 -
Cca07g02555 452 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02555 452 MobiDBLite consensus disorder prediction 1 51 - -
Cca07g02555 452 Pfam Protein kinase domain 77 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02555 452 PANTHER OS07G0668900 PROTEIN 1 442 - -
Cca07g02555 452 MobiDBLite consensus disorder prediction 357 452 - -
Cca07g02555 452 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 442 - -
Cca07g02555 452 Gene3D Phosphorylase Kinase; domain 1 48 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02555 Cca-Chr7 54580630 54583591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02555 1 352 Glycoside Hydrolase AT3G07070 66.667 2.52e-171 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca07g02555 Pkinase 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02555 K13430 - gmx:100305422 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02555 07 54580630 54583591 Cca07g02555 07 54580630 54583591 ECH