Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02550 ATGAAGGGGATGGAGCTGTTGTTAGAAGAGGCATTGGAAGGTTTTTTTTTTTGTGTATTGAATCAACTTTCTTCTATTTCAATTCATGACTTATTGATTCATTCTTGTATCAGAAGCGACTTGAAGAACCTGGATCCCTTCTTAATGTTGGATCACTTCTCAGTATCTCCCCCTGGAGGATTCCCTGATCATCCACACAGAGGTTTTGAGACAGTCACATACATGCTAGAGGGAGGCATAACTCACCAAGACTTTGCTGGCCATAAGGGTACAATAAGAACTGGTGATGTTCAGGTACCACAACTACTACTCAATGATGAAAAAAAGAACAAGATTGATTGGTTTGTTACTTGTTACAATATATTTGTATGTGTGCAGTGGATGACTGCAGGCAGGGGAATAATTCATTCTGAAATGCCCGCAGAAGCAAACAACAAGGGCTTGCAGCTGTGGATCAATTTATCAGCCAAGGACAAAATGATCGAGCCTAGATACCAAGAGCTTCCAAGTGAGAACATACCAAAAGCAGAAAAAGATGGCGTTGAAGTGAGAGTTGTAGCAGGAGAAGCAATGGGAGTGCATTCTCCTGTGTACACACGAACTCCAACCATGTTCCTTGTTTTCTCCATGATGCCAGGAACTGAGTGGCATCAGATCATTCCAGAGTCATGGAATTCCTTTGTTTACATAATTGAAGGAGAAGGTGTATTCGGGTGTCCAAATTCACCTCCAACTGTGGCACACCATGTCCTTGTTTTGAGCCTAGGAGATGGCCTTAGCGTGTGGAACAACTCCTCAAAGCCTTTGAGGTTTGTTCTGATAGGAGGAGAACCAATCAACGAGCCAGTGGCTCAGTATGGTCCTTTTGTGATGAACACACAGTCTGAGATTGAGAAAACAATTGAAGACTATCAGTATGGCAGGAATGGTTTTGAGATGAGGAAGTATTGGAGATCTCAATAG 963 0.4247 MKGMELLLEEALEGFFFCVLNQLSSISIHDLLIHSCIRSDLKNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRTGDVQVPQLLLNDEKKNKIDWFVTCYNIFVCVQWMTAGRGIIHSEMPAEANNKGLQLWINLSAKDKMIEPRYQELPSENIPKAEKDGVEVRVVAGEAMGVHSPVYTRTPTMFLVFSMMPGTEWHQIIPESWNSFVYIIEGEGVFGCPNSPPTVAHHVLVLSLGDGLSVWNNSSKPLRFVLIGGEPINEPVAQYGPFVMNTQSEIEKTIEDYQYGRNGFEMRKYWRSQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02550 320 CDD cupin_pirin_N 38 154 - -
Cca07g02550 320 SUPERFAMILY RmlC-like cupins 125 318 IPR011051 -
Cca07g02550 320 Pfam Pirin C-terminal cupin domain 206 310 IPR008778 -
Cca07g02550 320 PANTHER PIRIN-RELATED 35 98 IPR012093 -
Cca07g02550 320 PANTHER PIRIN-RELATED 125 320 IPR012093 -
Cca07g02550 320 Gene3D Jelly Rolls 29 283 IPR014710 -
Cca07g02550 320 PIRSF Pirin 124 318 IPR012093 -
Cca07g02550 320 PIRSF Pirin 32 99 IPR012093 -
Cca07g02550 320 CDD cupin_pirin_C 202 278 - -
Cca07g02550 320 PANTHER PIRIN-LIKE PROTEIN 35 98 - -
Cca07g02550 320 PANTHER PIRIN-LIKE PROTEIN 125 320 - -
Cca07g02550 320 SUPERFAMILY RmlC-like cupins 37 99 IPR011051 -
Cca07g02550 320 Pfam Pirin 125 152 IPR003829 -
Cca07g02550 320 Pfam Pirin 39 99 IPR003829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02550 Cca-Chr7 54525393 54527505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02550 19 315 Calmodulin-binding Proteins AT3G59220 55.518 4.69e-113 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02550 K06911 - gmx:100775597 466.463