Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02547 ATGGCTTCAACTTTGGAGGAGCTTCTTGAAGAGGAGGGGTTCAAAGAAAGCAGAAGAATGACAAAGTCTAGATCCTCCTTCCACCATGGTGCTTCAAGTGAGCCTCTTTACTCTGTGGAAGGGAGATTTAGTGTGTCAAGTGAAAGAATTCGAACACACAGAACAAGCTCTGGTGCCTCACGATATCAGATTACAAGTGGACAAATAAAAGTTGACTCTCTTACTGCTAAGAACGGGAGGTCAAGGGATAATGTTTTTTTGAGAGACAAAATGGACGAACGGTTGAAGAATGAAATTGAGAAGAACTCTTCTACCGATACAGATTCCGCTGGCAAAGGAGTTGATACCAATTCACCAGAGTACATGCCAAGGTATGAGATCCCTGAGGTGATTGAGCAAGAATCTAGCAGAGTTAAAGATACTTATTCAAAAGAAGTGTCTGCAAAAAGAGGCAAAGAGACGAATTTCAATGAACTTGTGGAAGAGCCTGTCAAGGATGCAAAGGTGCACAGCAGAAGTTCCAGTATGCATATGCTTAGACACTCTAGTGAAACTAGAAAGAATATAAAACCCCAGAAGGACTCATACTCTACATCTAAGAGCAAAAGCTTTGATTATAGTAGCAGAAATAAAAATAGCAATCATGCTATGCAAGAAGCTTCTACTCTAGCTCTTGATGAAGCAGCTATCAAAGCAGTAGTTTCCATTCTTAATGGATATATAAAACGTTTTCCAAAAGATGAGGATTTTCGGTCTTCATTGCGTCACAAATGTTTCTCCTCCTTCAACTTTATTGAACTGGAAGAAGAGAACAATTCTGAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAAGAAACTGCTGAGGAACCTATATCCACCACGTATCTGAAAAGAACCACGATGCAGCTTAGCATAATTACAGGTTTGAGTTTAAATGATTTGAAGTACGAGTGTACGTGTGGAATCCCAAACTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATACATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTCTCAGGCAAGGACTATATTGTTGCCTGAACTGTGGGAGCATCTATTTTCTCCACAATTTTCTCATTTGAAGGCATGGTATAAGAAGGAAGCAGAAGTTCTAGTAGATGCACCAAGCAAAACAAGAAAGCTAAAATTTCTTCAAAAAGTATATAATGAACATCTGGATTCTGGAACTCGTATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTAGAATCTCCACATATTCCTTCAATTAGCATTCCTTCGGTTTCTGTCACAGGAAGTCAAGAGGGAAGTTCACTTGGTCATTCTTTTGAGTCTACTAACTCCGTTGATTCATTCTCACCGCAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTCAAGTAAACCTAGAGTTTACCAAGTCAAAGATATTAAGGATGATGATAACTTAGAAAAGTGTGTGCATGGCTCTTATGGTTCAACTATTGTTAAACAGACATTAACTTATGAGTCTGAAACTGTCAAATTTACAGATCAAGACATTGAAGATTTTGTTGAAGGTGTAGCAATTGATACAATCAAGCCTCAGAAAGGAACTTCAATGACTCTAGAAGAATCGCAGAAAAGGAATCTCAGCGATGACACTAATAACTCTTTCTCTATGCAGACTAAGTTAAGCAGTCACGTTATCGACGATTTCTCACATGAAAAATCAAATGACCTTGCTCTCAAAAAGCCAAATAAGACAAGTTCTGCTCTTGTAGGATCATATTTTCCAAGCATACCACAGGAATTTATTTGTCCTCTTACTGGAAATATCTTTGAGGAACCAGTGACCCTAGAGACTGGTCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCGGTAACAGGAAATACTTTGGAATGTGTGGTCATGCCATTTACCAACCTTATTCTGAAGCGTTTGATTGATAATTGGAAGTCAGAACGTTTTGATTACCTCCTTGATCTTGCTTCTCAAACAATAGAGAATTCAGAAGAGTTTAAGTTGAATAAGAAGGATGAGGCTGCCGTTTTCGTGTTAGTGAGTCTTCTCTCCTCTTTGAAAGAAGAGGAAAAATCAACTTATGCTAAGCATCTCATCTCTTTAGGAGTTCTTCCATTTCTCTTTAGGAGGTTTGAAAAGGGAAATGTGCAAGAAAAATCACATGTGGTATCACTCTTGCTAAATTGTATTCAAGTGGACCCTGGTTGCATATATATGATAGCAAGGAGTGTTAACAGAAAATGTCTACTCGAGCTTCTTCACAGCAAGGAAGATACCCCAACAACAAATGCAATACGATTCCTTACTGGACTTTTATCAATGAAGAGGAGAAAGGATTTTACTTCATTCATTAGTCGCTTGGCGGGTGAAAAAGTATTTAATATAATGCATATTCTGCTCATGTATCTCAAGAATTCTTCATTTGAAAAGCCCCTAATTGCTGTTCTTTTGTTACACTTTGATCTGCTGATTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCTGTGAATGGCATTGCAGAGGCACTTGATGCCAGCTTAAATGATGACAAGTCCCGAGAGAAGTGTTGCAGAGCACTTTTAATCTTGTGCGGCCATTTTTCTTCTACTGGAAAGATACCAACCAAGACTAGCATCTTAAAACAAGCAGGTTATAATAATGATAGCTTAGAAGGGAAACCTCTTGGCCATGAAGAAGAGGGTAAACAGTCAGATGCAACCATTTCATGGGAAGATGAAGATGAAGAAAAAAGGGGTGAAGAGTTGCTAAAGAACCTGTTAAAGTCGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGAGCATATATAGATGTTTAGATTGTAAGCACCTAGAATTAGTGAGGACGTGTCTAATAACTGTGACGTGGTTGAGCTCCTCATTATCTACATTATTTGGTTCTGGATTGCATCTTCCTGCCTTCTTATCCATCATTTCTCAGTTGAAAGGAATCCTCGAAAATGGAGAACTTGAGCTGAAGACTCTTGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGCAGAACGCTTTTGAAGACTATGGCAGATGATATTGCTCCCCTTCTTCATGGACTTGTTGAAGTAACATGGACTGCAAAGCAGCTGCATGCCATTGTGTCTAGGGAGAATTTGTAG 3300 0.3891 MASTLEELLEEEGFKESRRMTKSRSSFHHGASSEPLYSVEGRFSVSSERIRTHRTSSGASRYQITSGQIKVDSLTAKNGRSRDNVFLRDKMDERLKNEIEKNSSTDTDSAGKGVDTNSPEYMPRYEIPEVIEQESSRVKDTYSKEVSAKRGKETNFNELVEEPVKDAKVHSRSSSMHMLRHSSETRKNIKPQKDSYSTSKSKSFDYSSRNKNSNHAMQEASTLALDEAAIKAVVSILNGYIKRFPKDEDFRSSLRHKCFSSFNFIELEEENNSETKVIRSLEQAIEAIEETAEEPISTTYLKRTTMQLSIITGLSLNDLKYECTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPSQARTILLPELWEHLFSPQFSHLKAWYKKEAEVLVDAPSKTRKLKFLQKVYNEHLDSGTRIFAVYYKDWLTEGVESPHIPSISIPSVSVTGSQEGSSLGHSFESTNSVDSFSPQPMVSKKLYDSMFGSSSKPRVYQVKDIKDDDNLEKCVHGSYGSTIVKQTLTYESETVKFTDQDIEDFVEGVAIDTIKPQKGTSMTLEESQKRNLSDDTNNSFSMQTKLSSHVIDDFSHEKSNDLALKKPNKTSSALVGSYFPSIPQEFICPLTGNIFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNTLECVVMPFTNLILKRLIDNWKSERFDYLLDLASQTIENSEEFKLNKKDEAAVFVLVSLLSSLKEEEKSTYAKHLISLGVLPFLFRRFEKGNVQEKSHVVSLLLNCIQVDPGCIYMIARSVNRKCLLELLHSKEDTPTTNAIRFLTGLLSMKRRKDFTSFISRLAGEKVFNIMHILLMYLKNSSFEKPLIAVLLLHFDLLIEPQKFSIYREVAVNGIAEALDASLNDDKSREKCCRALLILCGHFSSTGKIPTKTSILKQAGYNNDSLEGKPLGHEEEGKQSDATISWEDEDEEKRGEELLKNLLKSLIGDGESPFLKSIYRCLDCKHLELVRTCLITVTWLSSSLSTLFGSGLHLPAFLSIISQLKGILENGELELKTLASLSLLNFSKISECRTLLKTMADDIAPLLHGLVEVTWTAKQLHAIVSRENL 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02547 1099 MobiDBLite consensus disorder prediction 157 193 - -
Cca07g02547 1099 ProSiteProfiles Zinc finger SWIM-type profile. 308 346 IPR007527 GO:0008270
Cca07g02547 1099 SUPERFAMILY RING/U-box 617 692 - -
Cca07g02547 1099 MobiDBLite consensus disorder prediction 194 213 - -
Cca07g02547 1099 MobiDBLite consensus disorder prediction 157 213 - -
Cca07g02547 1099 Gene3D - 706 1094 IPR011989 -
Cca07g02547 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 696 IPR013083 -
Cca07g02547 1099 MobiDBLite consensus disorder prediction 937 960 - -
Cca07g02547 1099 SUPERFAMILY ARM repeat 702 1065 IPR016024 -
Cca07g02547 1099 MobiDBLite consensus disorder prediction 8 23 - -
Cca07g02547 1099 MobiDBLite consensus disorder prediction 97 122 - -
Cca07g02547 1099 Pfam U-box domain 622 692 IPR003613 GO:0004842|GO:0016567
Cca07g02547 1099 PANTHER OS04G0584500 PROTEIN 1 1097 - -
Cca07g02547 1099 MobiDBLite consensus disorder prediction 1 63 - -
Cca07g02547 1099 SMART Ubox_2 625 689 IPR003613 GO:0004842|GO:0016567
Cca07g02547 1099 CDD RING-Ubox_PUB 626 667 IPR045210 -
Cca07g02547 1099 Coils Coil 264 291 - -
Cca07g02547 1099 MobiDBLite consensus disorder prediction 938 960 - -
Cca07g02547 1099 ProSiteProfiles U-box domain profile. 621 696 IPR003613 GO:0004842|GO:0016567
Cca07g02547 1099 PANTHER OS04G0584500 PROTEIN 1 1097 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02547 Cca-Chr7 54497632 54504987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02547 605 773 U-box Gene Family AT1G29340 27.461 4.42e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02547 - - ccaj:109801846 2079.29