Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02543 ATGCCGGAGCTTCGTAGTGGACCGCGAAGACGTCGTGCTCCGGTAGGTCGCAGAAGCTCAGAAACGCCGTCTCCGACAACGAAATACGTGAAAACTCGCGCTGCAGTCGCAAGAGAGGCGGCGGCGACAGCAGAGAGGCCAAGAACTCGTTTGGCGGCCAAGAAAGAGGAAGAGAAGCCTTTGATAGTAATATCTGATCACTCTAAGAAGATTGTTGAAGAAAACATGGGCGATAGCGGCGGTTTGAGCGGGAATAAAGTTGTACCACAGGAGGAAGAAGCCAACGCAACTCCTTTTCCAGAAAGGGTTCAAGTAGGCGGATCACCTATTTATAAGGTGGACCGAAAACTTGGGAAGGGAGGTTTTGGGCAAGTTTTCGTTGGCCGGAGAGTAACAGGGGGCAATGACAGGACCTCTGGCTCTGGTGCCACTGAGGTGGCATTAAAATTTGAGCATAGAAACAGCAAAGGTTGTAACTATGGCCCTCCTTATGAATGGCAAGTGTACAATACACTTGGTGGAAGTCATGGAATCCCTAAAGTGCATTTCAAAGGGAGACAGGGAGAATACTATGTGATGGTTATGGACATGCTAGGTCCAAGTCTGTGGGATGTGTGGAATTCTTCAAGCCAGGCGATGTCTGCTGAAATGGTTGCATGTATTGCTGTTGAGTCCTTGTCGATCTTGGAGAAGATGCACTCCAGAGGTTATGTGCATGGAGATGTAAAACCAGAGAACTTCTTACTAGGTCAACCGGCTACACCACAAGAAAAGAAATTGTTTCTTGTAGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCTAGTGGGCAACATGTTGAATATGATCAACGTCCTGACATGTTTAGAGGGACTGTTAGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGACGGTTACCTTGGCAAGGTTATCAGGGTGATAATAAATCCTTCCTTGTTTACAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGTTTCTGCCTTGCTCCTTTTAGACAGTTCCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCTAACTATTCCAAGCTTATATCTTTATTTGATGGTATGCTTAGGCCCAATCCTGCATTGAGGCCTATTAATACTGAAGGTGCTCAAAAGGTTGGTCAGAAGAGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGGATGCCAATGAAGCAAAGGTATCATTACAATGTAGCAGATGCAAGATTAGCACAACACGTAGAAAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTGGCATCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGTTTTTCTAGTCAAGTTTATAAGTTGTCTACAATTTTTTTACACAAGGAATGGATCATGGAGCAATGGGAAAAGAACTATTACATCACTTCTATTGCAGGGTCTACTAATGGGGGCTCTCTTGTGGTGATGTCAAAAGGCACACAATATACCCAGCAATCATATAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAGAAGTGGAGGGAAGGTTTTCATGTGCCCTCAATGGCCACTGCCGGAAGCCGTTGGGGCGTGGTTATGTCTCGAAATGCTGGATTCAGTGATCAGGTTGTTGAACTTGATTTTCTCTATCCCAGCGAGGGAATCCACAGAAGATGGGATAATGGTTATAGGATCACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGCATTCCTAGGCGCAGGCCTGGAGATGAAACTCAGGAGACATTGCGGACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAATCTCTATCTTGCTTGTTTGTGCTATGGACGCACAGTTTGCTGA 2022 0.4421 MPELRSGPRRRRAPVGRRSSETPSPTTKYVKTRAAVAREAAATAERPRTRLAAKKEEEKPLIVISDHSKKIVEENMGDSGGLSGNKVVPQEEEANATPFPERVQVGGSPIYKVDRKLGKGGFGQVFVGRRVTGGNDRTSGSGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHFKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPATPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVYKKKMGTSPEMLCCFCLAPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLRPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARMPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSTIFLHKEWIMEQWEKNYYITSIAGSTNGGSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVPSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02543 673 ProSitePatterns Protein kinases ATP-binding region signature. 117 149 IPR017441 GO:0005524
Cca07g02543 673 ProSiteProfiles Protein kinase domain profile. 111 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02543 673 Pfam Protein kinase domain 111 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02543 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Cca07g02543 673 CDD STKc_CK1 111 386 - -
Cca07g02543 673 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 69 644 - -
Cca07g02543 673 PANTHER CASEIN KINASE-RELATED 69 644 - -
Cca07g02543 673 SUPERFAMILY Protein kinase-like (PK-like) 111 396 IPR011009 -
Cca07g02543 673 SMART serkin_6 111 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02543 673 MobiDBLite consensus disorder prediction 1 49 - -
Cca07g02543 673 MobiDBLite consensus disorder prediction 1 17 - -
Cca07g02543 673 Gene3D Transferase(Phosphotransferase) domain 1 85 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02543 Cca-Chr7 54448543 54454757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02543 110 272 EF-hand Containing Proteins AT4G35310 27.545 4.50e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Cca07g02543 Pkinase 2.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02543 - - gmx:100819969 1236.86