Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02489 ATGTTAACTACAATTGTAAtctccctcttccctttatctatctctgtctctcttctctACCAAGCTATTTGTCTGAAAATGCAACTTCTTCCAACCATCTTTTTCTCATTCTTGGTCATAGCCATCATCCTAAATCAAATTCCAACATCGTCTAGTGCTGATGATGTGCATTATCTGAGATGCAGTTCTTCATTTCAATGTGCAAATCTCAAAAATCTGAGTTATCCTTTCTGGGGATCTAGTAGACCACAATACTGTGGCCACCCTGCATTTAAGCTACAATGCACAGGTGAAGTAGCAATGATTACCATTATGTCAGAGAGTTACAAACTTCTTGAAGTCAATCACTCTGATCATAGACTCAGAGTTGTAAGAAATGATTACTGGAACAGCACTTGTCCAACTAGCCTCAGGAACATCACTTTAGGTTGCACTTTCTTTGATTATGGTTCAGATTCTCAGAACCTGTCTCTCTACTATGATTGTCCAACCCCTCCATTTCCTCAGCCAGGTAGCTTTTCCCCTCGGTTTAATTGCAGTGTAAATGCAACTCAAATGATTAACTATTTTGTGGTGGAGAGCATGCTTGAAAATGCTGAGTCAAGTGAAATACTTGGAGCATGCAAATCTAGAGTCGCTGTTCCAATTTTGGAGTCAGAAGCTGAAGTTCTAGAAACAAATTCAACAGTGGAAAATCTTAAGGTCGCTGTTGATAATGGTTTTAACGTGGAGTGGAATGCAAACAATAGTTTGTGTGATGAATGCCAAAACTCTGGTGGCCATTGTGGTTATAACCCAAGCTCAAGTCAATTTGCTTGCTATTGCAAGGATGGATCTTTTCCATCTTCATGTAAATCAGGTAAATCTAACAAAGGTGTTTCAATAGGTGCTGGTGTAGGAGGAGCTGTAATCCTTGTTGTCATTCTTGGATGTGTGTTCTTTATGATGAAAAGAAGGAGAAAAATTGCGTATAATAAATCAAGAAGTGGGGACCTTTTCATGGCTCCTTCAAGTGCAGACACTTTTACATCTACAACGATCACGTCTCAAACTCAAAGTGTCTCTTCTTACCAATCTTCCAAGTCTAACATAGTGCCTCCCAGGAGTTACTACTTTGGTGTCCAGGTCTTTACCTATGAAGAACTAGAGGAAGCTACCAAAAACTTTGACACTTCTAGAGAACTTGGCGAGGGAGGTTTTGGCACTGTTTACCTAGGTGAACTCAAAGATGGGCGTACAGTTGCGGTGAAACGCCTTTATGAAAGCAACTTCAAACGTATGGAACAGTTCATGAATGAAGTTGAGATTCTAGCCCGTATAAGGCACAAGAACCTTGTGACACTCTATGGATGCACCTCTAGACACAGCAGAGAACTTCTCCTTGTTTATGAGTTCATACCTAATGGAACAGTGGCTGATCATCTTCAAGGGGAAAGATCAAAATCAAATCTACTCCCTTGGCCTATAAGGTTGAACATTGCAGTCGAAACAGCCGAGGCTCTAGCCTACCTACATTCAAAAGATGtcatacaccgtgatgttaaaaccaacaacattctcctggatgacaaattttgcgtcaaggttgcagattttggtctctcaaggttgttcccaaaccatgtcactcatgtatcaacagctccacagggaacacctggttatgttgatcctgagtattaccggtgctaccaactcactgataaaagtgatgtttatagctttggagtggtcttgattgagctcatatcaTCATTGCAAGCTGTGGACATCAACCGACATCGCAATGATGTGAACTTAGCAAACATGGCTGTCAATAAGATTCAGAACCAGGAACTGCATGAGTTGGTTGATCCTTATCTTGGGTTTGAAAGGGATCATGCTATGAGGAGGATGACAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAGCAGGAAAGAGAGATGAGACCCTCAATGGATGAGGTGGTGGATGTCTTGAGAGGGATCAAGAGTGGTGATCTTGGTGAAGGGAAAGATGTAGAAGTATTGGAAATTAGGACAGATGAAGTTAGACTTTTGAAGAAGGTTCCTTCCTCAGTTTCACCAGATTCAGTTGTTGATAAATGGGTCAGTGGCTCCTCTGTATCTAACTCCTCATAG 2145 0.3608 MLTTIVISLFPLSISVSLLYQAICLKMQLLPTIFFSFLVIAIILNQIPTSSSADDVHYLRCSSSFQCANLKNLSYPFWGSSRPQYCGHPAFKLQCTGEVAMITIMSESYKLLEVNHSDHRLRVVRNDYWNSTCPTSLRNITLGCTFFDYGSDSQNLSLYYDCPTPPFPQPGSFSPRFNCSVNATQMINYFVVESMLENAESSEILGACKSRVAVPILESEAEVLETNSTVENLKVAVDNGFNVEWNANNSLCDECQNSGGHCGYNPSSSQFACYCKDGSFPSSCKSGKSNKGVSIGAGVGGAVILVVILGCVFFMMKRRRKIAYNKSRSGDLFMAPSSADTFTSTTITSQTQSVSSYQSSKSNIVPPRSYYFGVQVFTYEELEEATKNFDTSRELGEGGFGTVYLGELKDGRTVAVKRLYESNFKRMEQFMNEVEILARIRHKNLVTLYGCTSRHSRELLLVYEFIPNGTVADHLQGERSKSNLLPWPIRLNIAVETAEALAYLHSKDVIHRDVKTNNILLDDKFCVKVADFGLSRLFPNHVTHVSTAPQGTPGYVDPEYYRCYQLTDKSDVYSFGVVLIELISSLQAVDINRHRNDVNLANMAVNKIQNQELHELVDPYLGFERDHAMRRMTTAVAELAFRCLQQEREMRPSMDEVVDVLRGIKSGDLGEGKDVEVLEIRTDEVRLLKKVPSSVSPDSVVDKWVSGSSVSNSS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02489 714 Pfam Wall-associated receptor kinase C-terminal 179 278 IPR032872 -
Cca07g02489 714 Coils Coil 591 611 - -
Cca07g02489 714 Gene3D Phosphorylase Kinase; domain 1 364 465 - -
Cca07g02489 714 Pfam Protein tyrosine and serine/threonine kinase 391 660 IPR001245 GO:0004672|GO:0006468
Cca07g02489 714 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 48 714 - -
Cca07g02489 714 ProSiteProfiles Protein kinase domain profile. 389 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02489 714 SUPERFAMILY Protein kinase-like (PK-like) 367 664 IPR011009 -
Cca07g02489 714 ProSitePatterns Protein kinases ATP-binding region signature. 395 417 IPR017441 GO:0005524
Cca07g02489 714 Pfam Wall-associated receptor kinase galacturonan-binding 61 125 IPR025287 GO:0030247
Cca07g02489 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Cca07g02489 714 SMART serkin_6 389 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02489 714 Gene3D Transferase(Phosphotransferase) domain 1 466 669 - -
Cca07g02489 714 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 48 714 IPR044652 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02489 Cca-Chr7 53674469 53681855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02489 65 714 Receptor kinase-like Gene Family AT1G25390 41.815 1.36e-155 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca07g02489 PK_Tyr_Ser-Thr 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02489 - - gmx:100811407 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02489 07 53674469 53681855 Cca07g02489 07 53674469 53681855 ECH