Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02488 ATGAAAGCTGTGCCTCTTGAGCCTTGTTTCATTTTCATTCTGTTTGTGATCTCAACCACTGTTCCAACTTGTCTCTGTGAGGATGATAGTAGTTACACGACCTGTAGTAACGCTTTCAGGTGCGGAAGTAGTGTCACAAATCTCAAGTACCCATTCTGGGGACGAAACAGAGATAAGTATTGTGGTTCACAGGAGCTCACATGCGAAGAGAATGTCCCCAAGATAACCATCCATGACACCAAATACCGTATTCTTCATTGGGATGATGCAAAGACACTCACAGTCGCTAGGGACGATTGGAGTAACATCTGTGTGGTGGGTGGTTACAAGAACATCACATTTGATAATACTCCCTTTCAATATGATTATGATGTGCTTTTTAACTTGACGCTGTATTATGAGTGCTCTTCAAGTTCAAACCCCAATAGCATCACGAATCCCTATAGTACTGGCTGTGGAAATGATGTCTACTACACTTTCGGACCTTTCCCTTATTCGTATACTGGGCCATGCAAGATTGTGGTCATTCCTATTTCTCAAAACATCACTTCACTTGTGTCTGCCGATTCCAATGCAATAAACACAGCACTGAATGACGGTTTCGGATTGGAGTGGACGGGAAATCAGGATCAGTGCAAAACTTGTACTGATTCTGATGGAAAGTGTGGCTTCGATGCTGCAAAATTTCAATGTTTCTGCAAGGATGGACTTCAAAATGCTTCATGTCCACACTCAGTTATGCTTGCTATAACTTCTTCATTTCTCAGACTTTTTTTTATTCAAGGTCTAAACAGAAACCAATTTCCGGATTTTGGCTCGTTCTCCGTCAAATATCTGCAAATAATTATTGCAATATTTCAATTCAAAGGAAAAAGAAAAGTCCGATTGCTAACAAAAATCTTGATTATTGCATCCACAATTGTTGCTGTAACACTTATCTTTTTATGCTACTATTTGACAAAGAGGAAATCAAGCTTCAACCACTTCCACATGTCAAAAAAATTTGTGTTCGCATCAAAAAAGAATATTAAGAGTCTTCTTAGAGAAAATTTTGGCAATGAAAGTGTCACACTAGAACACTTGCGGTTCAATTTAGCTACAATTATAACAGCAACTAACAACTTTTCAAATGAGAATAGGATTGGTAAAGGAGGATTTGGAGAAGTTTATAAGGGAATTCTCCTTGATGGACGACAAatagcagtaaaaagactttcaaaaagttctatgcaaggtgcaaatgagttcaagaatgaagttttagtgatagccaaacttcaacatagaaatcttgtgacattcattggtttttgtcttgaaggacaaaataaaatacttatatatgaatatgtgtcaaacAAAAGCCTTGACTATTTTTTATTTGATTCTCAACGGTCAAAGTTGTTGAATTGGTTTGAACGTTACAATATTATAGAAGGGATTGCCAAAGGAATTCTTTATTTACATGAACTTTCTCGCCTCAAAGTTATACACCGTGATCTCAAACCAAGTAATGTTCTATTAGATGAAAACATGATTCCAAAAATTTCTGATTTTGGTCTAGCTAAAATTGTTGAAATAAATCAAGACCATGAGGGTACAAATAGAATTGTCGGAACATTTGGTTATATGTCTCCAGAATATGTAATGTTTGGACAATTTTCAGAGAAATCTGATGTTTTTAGTTTTGGAGTCATGATTCTAGAGATTATTACTGGAAAAAAGAATTTGAGTTCTTATGAACTGCATCGTGTTGCTGATGGCCTCTTAAGTTATGTTTGGAAACAATGGAGGGATCAAACACTATTAAGCATATTAGACCCAAGTATTGAAGAAAATTATTCTAAAATAGAAGTTGTTAAGTGCATTCAAATTGGTTTATTATGTGTTCAACATGATCCTAATGCTAGACCAACAATGTCAACCGTTGTTTCGTATCTTAGTAATTACTCAATTAACTTGCCAACTCCAAAAGAACCTGCATTTTTCTTGCATGGCAGAATGGATCCAACAACATTCCCACAAGAATCAAGTTCCAATCAATTTATCAATAGATACATTCCATTATCTATTAATGAAATGTCTATAAGTGAATTTCTTCCTCGATAA 2109 0.3338 MKAVPLEPCFIFILFVISTTVPTCLCEDDSSYTTCSNAFRCGSSVTNLKYPFWGRNRDKYCGSQELTCEENVPKITIHDTKYRILHWDDAKTLTVARDDWSNICVVGGYKNITFDNTPFQYDYDVLFNLTLYYECSSSSNPNSITNPYSTGCGNDVYYTFGPFPYSYTGPCKIVVIPISQNITSLVSADSNAINTALNDGFGLEWTGNQDQCKTCTDSDGKCGFDAAKFQCFCKDGLQNASCPHSVMLAITSSFLRLFFIQGLNRNQFPDFGSFSVKYLQIIIAIFQFKGKRKVRLLTKILIIASTIVAVTLIFLCYYLTKRKSSFNHFHMSKKFVFASKKNIKSLLRENFGNESVTLEHLRFNLATIITATNNFSNENRIGKGGFGEVYKGILLDGRQIAVKRLSKSSMQGANEFKNEVLVIAKLQHRNLVTFIGFCLEGQNKILIYEYVSNKSLDYFLFDSQRSKLLNWFERYNIIEGIAKGILYLHELSRLKVIHRDLKPSNVLLDENMIPKISDFGLAKIVEINQDHEGTNRIVGTFGYMSPEYVMFGQFSEKSDVFSFGVMILEIITGKKNLSSYELHRVADGLLSYVWKQWRDQTLLSILDPSIEENYSKIEVVKCIQIGLLCVQHDPNARPTMSTVVSYLSNYSINLPTPKEPAFFLHGRMDPTTFPQESSSNQFINRYIPLSINEMSISEFLPR 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02488 702 CDD STKc_IRAK 381 647 - -
Cca07g02488 702 Pfam Protein kinase domain 376 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02488 702 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 259 691 - -
Cca07g02488 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Cca07g02488 702 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 259 691 - -
Cca07g02488 702 Gene3D Transferase(Phosphotransferase) domain 1 451 655 - -
Cca07g02488 702 Pfam Wall-associated receptor kinase C-terminal 170 236 IPR032872 -
Cca07g02488 702 SUPERFAMILY Protein kinase-like (PK-like) 357 681 IPR011009 -
Cca07g02488 702 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Cca07g02488 702 Gene3D Phosphorylase Kinase; domain 1 336 450 - -
Cca07g02488 702 ProSiteProfiles Protein kinase domain profile. 375 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02488 702 SMART serkin_6 375 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02488 Cca-Chr7 53650505 53657042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02488 353 702 Receptor kinase-like Gene Family AT4G11530 53.258 8.07e-129 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g02488 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02488 - - ccaj:109801875 1356.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02488 07 53650505 53657042 Cca07g02488 07 53650505 53657042 ECH