Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02479 ATGGAATTCAATAGTAATTCCATTTCATCAAATTTGCTGCCAAATTCCATGTCAGCGCCCTCTTATTCAAAGTCTCAGTACTATCAAGAAGATAGAGAGGGACACATTTTCGATTCAATGGATTTCAATAGTAGTTCAATTTCACCAAATTTGTTGTCAAATTCCATATCAACACCCTTTTATTCGAAGCCTCAGAGTTGTCAAGAAGATAGAGAGGGAAACATTTTCAATTTACCAATGGATTTCAATAGTAATTCAATTTCACCAATTTTGCAACCAAATTCCATGTCGACCCTTTATTCAAAGCCTCAATATTGCCAAGAAGATATAGAGGGAAGCATTTTCAATTTACCGATGGATTTCAATAGTAATTCAGTTTCATCAAATCTGCTGTCGAATTCCATGTCAACACCCTCTCATTTGAAGCCTCAGAATTATCAAGAAGATAGAGAGGTTAGCACTTTCAATTTACCAATGGATTTCAATAGTAATCCAATTTCACCAAATTTGTTGCCAAATTCCATGTCAGCGTCCTCTTATTCAAAGCCTATATATTGTCAAGAAGATCAAGAGGCAAGAAATTTTGATTTACCAATAGAGTTCAATAGTAATTCAATTTCACCAAATTTGTCGTCAAATTCCATGCTGACACCCTTTTATTCAACGTCGCAATTTTCTCAAGAAAGAGAGGAAAGCAATTTCAATCTTCCATTGAATTTCAACAATAATTCAATTTCACCAAATCTACTGCCAAATTGCATGCCAGTACCCTCTTATCCAAAGTCTCAATATCATCAAGAAGATAAAGAGACAAAcaatttcaatgttccaatgaatttcaatagtaattcaatttcaCTAAATCCGACACCAAATTCTTTGTCAGCACCCTCCTATCTAATGCCTCAATATTCTCAAGAGCATAAAGAGGGAACCAATTCCAAACTACCAATGAATTTCAATGGTAATTCGATTTCGCCAAATTTGATGTCAAATTCTACGTTGGTACCCTCTTTTCCAATGCCTCGCTATCATCGTGCAGATAAAGAGGAAGAGCAAAAACTTCGATTATTCTGGGAGAAGCAATTGTTCAATATTCAAGTTGCTGAAGCATTTAAGAGCCAGCAACAGTTGCCGCTAGCTCGAATTCGAAGGATCATGAAAACAGACCCAGAAGTGCAGATGATCAGTGCTGAAACTCCAATACTTATGTCAAAAGCATGTGAGATTTTCATTCAGGAGCTCACTTATCGTGCTTGGATGCGTGCTGAAGAGAGCAATAACCAAACTGTGCAACCTTGTGATGTTGCCAAAGCCATTGTGCAAACTAATGCCATGAATTTCCTCACTGAGATTGTTCCAAATGAACTCCTCCATTTCTGTGCTCTTGATGCCCAGGAAGAGAATGCTGGAAACATTGCAGAAGGAAATCAAGCTGCCATGCCTTACACTGCTGGTTTTATGGGAAATCCTATGATGAATATGGGCAATGACTTGGAGGCAATAAACCAAGTGATTCCTCAACCCAACATGATGCAGCCATCCTATATGCCTTCACAACAATTGCCATACAACTTTCATCCCAAGTGA 1590 0.3686 MEFNSNSISSNLLPNSMSAPSYSKSQYYQEDREGHIFDSMDFNSSSISPNLLSNSISTPFYSKPQSCQEDREGNIFNLPMDFNSNSISPILQPNSMSTLYSKPQYCQEDIEGSIFNLPMDFNSNSVSSNLLSNSMSTPSHLKPQNYQEDREVSTFNLPMDFNSNPISPNLLPNSMSASSYSKPIYCQEDQEARNFDLPIEFNSNSISPNLSSNSMLTPFYSTSQFSQEREESNFNLPLNFNNNSISPNLLPNCMPVPSYPKSQYHQEDKETNNFNVPMNFNSNSISLNPTPNSLSAPSYLMPQYSQEHKEGTNSKLPMNFNGNSISPNLMSNSTLVPSFPMPRYHRADKEEEQKLRLFWEKQLFNIQVAEAFKSQQQLPLARIRRIMKTDPEVQMISAETPILMSKACEIFIQELTYRAWMRAEESNNQTVQPCDVAKAIVQTNAMNFLTEIVPNELLHFCALDAQEENAGNIAEGNQAAMPYTAGFMGNPMMNMGNDLEAINQVIPQPNMMQPSYMPSQQLPYNFHPK 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02479 529 Gene3D Histone, subunit A 342 455 IPR009072 GO:0046982
Cca07g02479 529 SUPERFAMILY Histone-fold 330 449 IPR009072 GO:0046982
Cca07g02479 529 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 317 492 IPR027170 GO:0003700|GO:0006355|GO:0016602
Cca07g02479 529 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 377 440 IPR003958 -
Cca07g02479 529 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 317 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02479 Cca-Chr7 53581797 53587908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02479 358 525 CCAAT-HAP5 Transcription Factor Family AT1G54830 39.888 1.76e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca07g02479 CBFD_NFYB_HMF 4.7e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02479 - K08066 gsj:114370134 178.718