Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02474 ATGGAGGACCTCCTTccacaatcactcaccaccaacacccaccagccaccaccagccaccaccagccaccCAACGTCGAGAATCAGCACCAGCCCGTGGAGAACTTCGTTTAGGTTTCGCGATAGAATGATAAAGAGGAGGTTCTACAAGCTCGACCACGGTGATCGTGATGCCTCGGATCCGTCGTCTTCATCCTCGGACTCCGAGCTTGAAGTCGAACCTGAAGCCTCTGAAGAAGAATTGGATGACGATGCAGTTGCAGAAGTGGAACCGAGCGATGACGAAGCTGGTTCAACTTCTTCTGGGTATAAAAGCGAGGATAGTTCTGCGAATGATATTGATGTCAACTCAGCAGGTAGGCTATTTAGTGAAGATGATGCTGGAGCTTTAAATGAAAGACAAATGCTTATTAACAGGGAGTTGCTGAGTAAATGTGATACTGAAAAGTCTAATGTCTTGGCTGAAAAGAACTCCTTACCTACAGATTTGCCATCCTATGTCTTAAAATGCAAATCAGTATTTAAGTGCAGGATATGTCCCCGAATTGTCTGTTTATCTGAGGACACTTTGCGGGATCATCTGCAATCAAAGAGACATGCTCGATCTGAAAAACTACTAAATGAAGGAAGACTGAAGGCTATGCTCAACAGTGATGGTGAAATTGAGAACCAAGAAATCGCAGAGATTCAAACTAAAGATATTGAGGATAATGCTGAGAAGAATCACAAAGGGCAGAAGCAGCATAAAAAGAGATTGAGAAAGAAGAAAAGTGACAAAGCAAAAACAAGGAAAATGCCATCAACGAAAGAACCAGCCAAGAGAAGGCAAAATGTTGAATTGTATTACATATTGAACACGGACTTTCTAGCGGCCAGTTGGAAGCTACACTTGGATCACTTCCAAGCTCTTGAGGGACTCGGTAGGAACAAATTGATAAAGAAAAAATCGGAGCATATGGAGCCTGGCTGGAAGTGGAACAGATTAACTTGTATCAATCCTCTGGACATCACCCCATCTGTGAAGAATTTACATACTGATTCCCCCCTCCTCATCGACGGCGTCCACGTCACCCTCATCGACGCCAACCACTGCCCCGGCGCCGTCATCTTCCTCTTCTCCATCCCCCGCCCCCCCGCCGCCCCCCTCAGGTACGTCCACACCGGCGACTTCCGCTTTTCTAATACCCTCATTTCGGAGCCCGCCCTCGCTCCCTTCGTCGGCGCCGACGCCGTGTTTCTCGACACCACATATTGTAACCCTAAATTTAAATTCCCCTCGCAAGAGGAGTCTGTTGAGTATGTTCTCAATGTTGTGGAAAACGTTGAGCGTGAGTGTGAGGGTAGTAGTGACAACGTTTTGTTTCTTGTTGCTACTTATGTTATTGGAAAGGAGAAGATTTTGCTTGAGCTTGCACGCAGGTTTAAGAGGAAGATACACGTGGATGCTAGAAAGATGGAGGTTTTGAGCGTTCTTGGATACGGGGAGAGTGGCGAGTTTACCGAGGATGGGAAGGAGAGTAATATTCATGTGGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTTAGAATGAAGGAGCTTATGGCTGAGAGAAGAGGGTCCTACTCCAGGGTTGTGGGGTTTGTTCCGACTGGGTGGACTTATGAAGTGAAGAGGGGTCGGTTTGCGGTTAAGTCCAAGGATTCGTTTCAGATTCATCTTGTGCCGTATAGCGAGCACTCGAACTATGATGAGCTTAGGGAGTTTGTCAAGTTTTTGAAGCCCAAGCGGGTTGTTCCAACGGTGGGGTTGGATGTTGAGAAGAGTGACAGCAAACATGCTGACAAAATGAGGAAGTATTTTGCTGGGTTGGTTGATGAGACTGCCAATAAGCAGGAGTTTTTAAGGGGGTTTTGTCAAGCTCCTGGTGATGTGGGTTTTGAGGTTGAGAAGGGTGTTGATGCAAAGAAAGAAGTCAAACAATCAGAGACAGAAGGTGGTGGAAGTATTAATCCAGATGTGGCTGTGAGTTTGTCCACTTCTATGAGAGAAGCTTGTACACAAGATCCTGCTTTGCTGAATGATGAAGAAAAAGAGAAAATCATTCAAGAACTGAGTTGTTGTTTGCCCTCATGGGTCACCCGAAACCAGCTGTTAGATCTGATTGGCATCTCAGGGACCAATGTTGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGAGCAAGTGAATTCCTGTAAAGCTCCTGTTTCAACATCCAAGTGCTGCACATTAAATGACACGGATTCACTTAAAAAACCTTGCCCTAATACAAACGACGCTTCCAAAAATATTAACATTTTTCCAAGTCAAGACACGACTAAAATAACTAACCTGAAGCGTACAGTACCAAGTCCCATTTCTCCTGCCAAAAGGAAGAGAAGTAATGAAAGTaagcaaaacaaaatagtcaaaacaaaagccaaagcaaaaTCTGAACCAAGTGGTGCAAAGCAGCCGACAATTACAAGATTCTTCAGTAAAGTGATGCCTGAAGCGCCTGGCAGTACTCAAACTGATAGTATTGGACCAAAGCTTGAGCAAAGTTCCAAAGTTGTAGACTTATTGCCGACTCATGAAGAACAACAGTACAAGGATGAGATTGATCAATTCATGCAAATAATAAATGGGAACAAGTCACTAAAAGAATATGCCATCACTATAATTGAGAAGACGAAAGGAGATGTCAATAAGGCATTGGACATATATTACTGTAATGCTAATAATCTTGGTGAAGGTGAAATATCATGTCAAGTGGAGAGCAAAATTGATAGACCTGTAGTGAAGAAGCATGCATCAGAGGAATTGAGAATTATACCTGATATATCTGAGCAGAAAGTGTTAAAAGATAATGTAGATGCTGCTCATCTATCTCTACCACCTGATAAATACAACCCTAAAGAACATGCATGTTGGCGTGATGGACAGCCTGCACCATATCTACATATTGCACGAACCTTCAACCTTCTTGAGGGTGAGAAAGGAAAGATAAAAGCTACTTCATTGTTATGCAATATGTTCAGAAGTTTGTTGATCTTGTCTCCAGCTGATGTGCTTCCTGCTGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAGGAGTGTCGTCAAACACAGAGATTGCTTGCATCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAATATAAGTGTACAAACAGGCAGTGGAAGCACGTCTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTGTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTTGCCCTACTTTGCACAAAAAAGGAACTGCAGAAAATTTGAAGGAGAAACTTCAGGTTCTTTCTATGGAAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGCATCGAATTTTCAGTTTCAAATTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAGGTCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGCGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAGTTGATGGTTCAATTCGTGTTTTTTCAAGAAAAGGGGATGAATCAACTTCAAGATTTCCTGATCTAATTGACATAATTAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGGTATTGACAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGAAAGAGGTGGCAGAGATATGTTGATTACTGCAGAGAGCATCAAGGTAGATATTTGCATCTTTGTCTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTTAGACGAAAGTATCTGAGGGATTTGTTCTATGATGAAAAACCTGGGTATTTTGAATATGCTAAGGAAACAACTATTGAAGCAGACAATGCTTGTTTAACCTGTGAAGCAACATTAACTAAGATAAATGCTTTTCTAGAAGATGCACTACGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGATGCTGGGTATTTTCCATCAAAGCGTTCTGACAAATGGTTAAAGGTCAAGAGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCATGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCTTGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTACATAGAGATGAAAGAATTTTTCTCTGGGGACAAAGTTTTGTCCAAAAAGCCACCATATTATCAAACAGGAGAGGCACCAGACATGTGGTTTTCTCCACAAGTCGTTTGGGAAATAAGAGGAGCAGACTTTACAGTATCCCCCGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGTGGCATCTCAATCAGATTTCCAAGATTTATTCGTTCTGTCTCAGATAGAAACCCAGAAGAATGTAGCACACCTGCCGATATAGTTGAAATGTTTCATTCTCAGACTCGAAAGATGGACGTCACAGCTCAAAACTGA 4875 0.4119 MEDLLPQSLTTNTHQPPPATTSHPTSRISTSPWRTSFRFRDRMIKRRFYKLDHGDRDASDPSSSSSDSELEVEPEASEEELDDDAVAEVEPSDDEAGSTSSGYKSEDSSANDIDVNSAGRLFSEDDAGALNERQMLINRELLSKCDTEKSNVLAEKNSLPTDLPSYVLKCKSVFKCRICPRIVCLSEDTLRDHLQSKRHARSEKLLNEGRLKAMLNSDGEIENQEIAEIQTKDIEDNAEKNHKGQKQHKKRLRKKKSDKAKTRKMPSTKEPAKRRQNVELYYILNTDFLAASWKLHLDHFQALEGLGRNKLIKKKSEHMEPGWKWNRLTCINPLDITPSVKNLHTDSPLLIDGVHVTLIDANHCPGAVIFLFSIPRPPAAPLRYVHTGDFRFSNTLISEPALAPFVGADAVFLDTTYCNPKFKFPSQEESVEYVLNVVENVERECEGSSDNVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLSVLGYGESGEFTEDGKESNIHVVGWNVLGETWPYFRPNFVRMKELMAERRGSYSRVVGFVPTGWTYEVKRGRFAVKSKDSFQIHLVPYSEHSNYDELREFVKFLKPKRVVPTVGLDVEKSDSKHADKMRKYFAGLVDETANKQEFLRGFCQAPGDVGFEVEKGVDAKKEVKQSETEGGGSINPDVAVSLSTSMREACTQDPALLNDEEKEKIIQELSCCLPSWVTRNQLLDLIGISGTNVVEAVSNFYERETEFHEQVNSCKAPVSTSKCCTLNDTDSLKKPCPNTNDASKNINIFPSQDTTKITNLKRTVPSPISPAKRKRSNESKQNKIVKTKAKAKSEPSGAKQPTITRFFSKVMPEAPGSTQTDSIGPKLEQSSKVVDLLPTHEEQQYKDEIDQFMQIINGNKSLKEYAITIIEKTKGDVNKALDIYYCNANNLGEGEISCQVESKIDRPVVKKHASEELRIIPDISEQKVLKDNVDAAHLSLPPDKYNPKEHACWRDGQPAPYLHIARTFNLLEGEKGKIKATSLLCNMFRSLLILSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLASPTPLLIKDVFSALQNISVQTGSGSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSCPTLHKKGTAENLKEKLQVLSMEVVEAYNILPNLDLIVPSLMNKGIEFSVSNLSMVPGIPIKPMLAKVTNGIPQALKLFENKAFTCEYKYDGQRAQIHRLVDGSIRVFSRKGDESTSRFPDLIDIIKESSKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRERGGRDMLITAESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLRDLFYDEKPGYFEYAKETTIEADNACLTCEATLTKINAFLEDALRSSCEGIMVKTLDVDAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEAPDMWFSPQVVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRSVSDRNPEECSTPADIVEMFHSQTRKMDVTAQN 1624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02474 1624 SUPERFAMILY Nucleic acid-binding proteins 1470 1614 IPR012340 -
Cca07g02474 1624 MobiDBLite consensus disorder prediction 94 116 - -
Cca07g02474 1624 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1265 1273 IPR016059 GO:0003909
Cca07g02474 1624 MobiDBLite consensus disorder prediction 71 91 - -
Cca07g02474 1624 Pfam ATP dependent DNA ligase domain 1241 1461 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca07g02474 1624 Pfam ATP dependent DNA ligase C terminal region 1487 1595 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cca07g02474 1624 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1197 1463 - -
Cca07g02474 1624 Gene3D - 973 1243 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca07g02474 1624 Gene3D - 423 579 - -
Cca07g02474 1624 PANTHER DNA LIGASE 3 793 1621 - -
Cca07g02474 1624 Pfam Zinc-finger of C2H2 type 174 199 - -
Cca07g02474 1624 SUPERFAMILY Metallo-hydrolase/oxidoreductase 296 602 IPR036866 -
Cca07g02474 1624 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 975 1224 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca07g02474 1624 MobiDBLite consensus disorder prediction 798 837 - -
Cca07g02474 1624 Gene3D - 1252 1465 - -
Cca07g02474 1624 Gene3D - 1466 1623 IPR012340 -
Cca07g02474 1624 MobiDBLite consensus disorder prediction 808 828 - -
Cca07g02474 1624 MobiDBLite consensus disorder prediction 244 262 - -
Cca07g02474 1624 Pfam DNA repair metallo-beta-lactamase 497 602 IPR011084 -
Cca07g02474 1624 Pfam DNA ligase N terminus 995 1171 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca07g02474 1624 Coils Coil 235 255 - -
Cca07g02474 1624 CDD Adenylation_DNA_ligase_I_Euk 1230 1464 - -
Cca07g02474 1624 ProSiteProfiles ATP-dependent DNA ligase family profile. 1352 1499 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca07g02474 1624 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 1053 1611 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cca07g02474 1624 MobiDBLite consensus disorder prediction 50 117 - -
Cca07g02474 1624 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 793 1621 - -
Cca07g02474 1624 CDD OBF_DNA_ligase_I 1470 1613 - -
Cca07g02474 1624 MobiDBLite consensus disorder prediction 232 273 - -
Cca07g02474 1624 Coils Coil 1188 1208 - -
Cca07g02474 1624 Gene3D DNA ligase/mRNA capping enzyme 1270 1401 - -
Cca07g02474 1624 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02474 Cca-Chr7 53494448 53515440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02474 977 1614 Core DNA Replication Machinery Family AT1G08130 38.438 6.38e-160 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02474 - - gmx:100807673 2216.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02474 07 53494448 53515440 Cca07g02474 07 53494448 53515440 ECH